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Difference between revisions of "TSS:Mm 101508.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_010117:0 NM_001291818:0 uc011xsx....")
 
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{{TSSDetail
 
{{TSSDetail
 +
|Dist=
 +
|Dist1=
 +
|Egfr-rs=
 
|all_trans=ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_010117:0 NM_001291818:0 uc011xsx.1:0 uc007ijb.2:0 BC027346:0 AK144437:0
 
|all_trans=ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_010117:0 NM_001291818:0 uc011xsx.1:0 uc007ijb.2:0 BC027346:0 AK144437:0
 
|chr=chr11
 
|chr=chr11
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|distance_to_tss=19
 
|distance_to_tss=19
 
|end=32222315
 
|end=32222315
 +
|end_of_center_position=32222275
 
|entrez_id=13650
 
|entrez_id=13650
 
|gc_percent=0.80597
 
|gc_percent=0.80597
−
|gene_alias=C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242
+
|gene_alias=C16ORF8
 
|gene_description=rhomboid 5 homolog 1
 
|gene_description=rhomboid 5 homolog 1
 
|gene_id=13650
 
|gene_id=13650
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|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=MGI:104328
 
|hgnc_mgi_id=MGI:104328
 +
|mKIAA4242=
 
|nearest_ensembl=ENSMUSG00000020282
 
|nearest_ensembl=ENSMUSG00000020282
 
|nearest_promoter_id=NM_010117
 
|nearest_promoter_id=NM_010117
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|species=mouse
 
|species=mouse
 
|start=32222233
 
|start=32222233
 +
|start_of_center_position=32222274
 
|strand=-
 
|strand=-
 
|transcript_name=ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_010117 NM_001291818 uc011xsx.1 uc007ijb.2 BC027346 AK144437
 
|transcript_name=ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_010117 NM_001291818 uc011xsx.1 uc007ijb.2 BC027346 AK144437

Revision as of 22:53, 11 May 2019

Basic information about the TSS

TSS ID:mm_101508.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:32222233
End:32222315
Strand:-
TSS Score:1
Start of the center position in the TSS region:32222274
End of the center position in the TSS region:32222275



Gene and protein annotation

Transcript_name:ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_010117 NM_001291818 uc011xsx.1 uc007ijb.2 BC027346 AK144437
Distance:0
GeneID:13650
HGNC/MGI_ID:MGI:104328
UniProt_ID:A2AVE4 A2AVE5 F2Z3W3 Q6PIX5
Gene_name:rhomboid 5 homolog 1
Gene_symbol:Rhbdf1
Gene_synonyms:Dist Dist1 Egfr-rs
Gene_source:MGI:104328



Transcript annotation

Transcript_name:ENSMUST00000020524.14 ENSMUST00000146179.7 ENSMUST00000132578.7 ENSMUST00000150381.1 ENSMUST00000144902.1 NM_010117 NM_001291818 uc011xsx.1 uc007ijb.2 BC027346 AK144437
Distance:0
Num_trans:11
All_trans:ENSMUST00000020524.14:0 ENSMUST00000146179.7:0 ENSMUST00000132578.7:0 ENSMUST00000150381.1:0 ENSMUST00000144902.1:0 NM_010117:0 NM_001291818:0 uc011xsx.1:0 uc007ijb.2:0 BC027346:0 AK144437:0



TATA-Box annotation

Distance to TSS:19
Nearest PromoterID:NM_010117
Entrez ID:13650
Nearest Unigene:Mm.11545
Nearest Refseq:NM_010117
Nearest Ensembl:ENSMUSG00000020282
Gene Name:rhomboid 5 homolog 1
Gene Alias:C16ORF8
Gene Description:rhomboid 5 homolog 1
Gene Type:protein-coding
CpG%:0.15
GC%:0.80597
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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