Difference between revisions of "TSS:Mm 101510.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CGTHBA= | ||
| + | |HS-26= | ||
| + | |HS-40= | ||
| + | |Mare= | ||
| + | |Phg= | ||
| + | |Prox1= | ||
|all_trans=ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11:-30 NM_001284360:-30 NM_001284359:-30 NM_181569:-30 NR_104306:-30 uc007ijc.2:-30 uc033fuh.1:-30 uc007ijg.2:-30 uc007ijf.2:-30 uc007ijh.2:-30 uc007iji.2:-30 BC064471:-30 ENSMUST00000132856.1:33 ENSMUST00000109389.8:37 | |all_trans=ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11:-30 NM_001284360:-30 NM_001284359:-30 NM_181569:-30 NR_104306:-30 uc007ijc.2:-30 uc033fuh.1:-30 uc007ijg.2:-30 uc007ijf.2:-30 uc007ijh.2:-30 uc007iji.2:-30 BC064471:-30 ENSMUST00000132856.1:33 ENSMUST00000109389.8:37 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=77 | |distance_to_tss=77 | ||
|end=32267677 | |end=32267677 | ||
| + | |end_of_center_position=32267631 | ||
|entrez_id=17168 | |entrez_id=17168 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=Aag | + | |gene_alias=Aag |
|gene_description=nitrogen permease regulator-like 3 | |gene_description=nitrogen permease regulator-like 3 | ||
|gene_id=17168 | |gene_id=17168 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:109258 | |hgnc_mgi_id=MGI:109258 | ||
| + | |m(alpha)RE= | ||
|nearest_ensembl=ENSMUSG00000020289 | |nearest_ensembl=ENSMUSG00000020289 | ||
|nearest_promoter_id=NM_181569 | |nearest_promoter_id=NM_181569 | ||
| Line 24: | Line 32: | ||
|species=mouse | |species=mouse | ||
|start=32267583 | |start=32267583 | ||
| + | |start_of_center_position=32267630 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000136903.7 ENSMUST00000137950.7 ENSMUST00000149526.1 ENSMUST00000129010.1 AK086378 AK154884 AK036405 AK081902 AK047190 | |transcript_name=ENSMUST00000136903.7 ENSMUST00000137950.7 ENSMUST00000149526.1 ENSMUST00000129010.1 AK086378 AK154884 AK036405 AK081902 AK047190 | ||
Revision as of 22:53, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32267630 |
|---|---|
| End of the center position in the TSS region: | 32267631 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000136903.7 ENSMUST00000137950.7 ENSMUST00000149526.1 ENSMUST00000129010.1 AK086378 AK154884 AK036405 AK081902 AK047190 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENSMUST00000136903.7:0 ENSMUST00000137950.7:0 ENSMUST00000149526.1:0 ENSMUST00000129010.1:0 AK086378:0 AK154884:0 AK036405:0 AK081902:0 AK047190:0 AK039600:-5 ENSMUST00000124640.7:-12 ENSMUST00000141859.7:-12 AK090290:-12 ENSMUST00000020530.11:-30 NM_001284360:-30 NM_001284359:-30 NM_181569:-30 NR_104306:-30 uc007ijc.2:-30 uc033fuh.1:-30 uc007ijg.2:-30 uc007ijf.2:-30 uc007ijh.2:-30 uc007iji.2:-30 BC064471:-30 ENSMUST00000132856.1:33 ENSMUST00000109389.8:37 |
TATA-Box annotation
| Distance to TSS: | 77 |
|---|---|
| Nearest PromoterID: | NM_181569 |
| Entrez ID: | 17168 |
| Nearest Unigene: | Mm.263161 |
| Nearest Refseq: | NM_181569 |
| Nearest Ensembl: | ENSMUSG00000020289 |
| Gene Name: | nitrogen permease regulator-like 3 |
| Gene Alias: | Aag |
| Gene Description: | nitrogen permease regulator-like 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
