Difference between revisions of "TSS:Mm 101553.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUS...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Kchip1.2= | ||
|all_trans=AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8:-169 NM_027398:-169 NM_001190885:-169 NM_001290690:-169 uc007ikp.2:-169 uc007ikq.2:-169 uc007iko.2:-169 AK045948:-169 AB075041:191 AY050525:216 AY050526:216 DQ148495:216 | |all_trans=AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8:-169 NM_027398:-169 NM_001190885:-169 NM_001290690:-169 uc007ikp.2:-169 uc007ikq.2:-169 uc007iko.2:-169 AK045948:-169 AB075041:191 AY050525:216 AY050526:216 DQ148495:216 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=174 | |distance_to_tss=174 | ||
|end=33843416 | |end=33843416 | ||
| + | |end_of_center_position=33843411 | ||
|entrez_id=70357 | |entrez_id=70357 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=KCHIP1 | + | |gene_alias=KCHIP1 |
|gene_description=Kv channel-interacting protein 1 | |gene_description=Kv channel-interacting protein 1 | ||
|gene_id=70357 | |gene_id=70357 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=33843405 | |start=33843405 | ||
| + | |start_of_center_position=33843410 | ||
|strand=- | |strand=- | ||
|transcript_name=AY647242 | |transcript_name=AY647242 | ||
Revision as of 23:03, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 33843410 |
|---|---|
| End of the center position in the TSS region: | 33843411 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AY647242 |
|---|---|
| Distance: | -1 |
| Num_trans: | 21 |
| All_trans: | AY647242:-1 ENSMUST00000101368.8:-45 AY171234:-45 ENSMUST00000065970.5:-111 BC034241:-111 DQ148493:-111 AK013657:-146 AK014313:-157 AK046398:-157 ENSMUST00000109340.8:-169 NM_027398:-169 NM_001190885:-169 NM_001290690:-169 uc007ikp.2:-169 uc007ikq.2:-169 uc007iko.2:-169 AK045948:-169 AB075041:191 AY050525:216 AY050526:216 DQ148495:216 |
TATA-Box annotation
| Distance to TSS: | 174 |
|---|---|
| Nearest PromoterID: | NM_027398 |
| Entrez ID: | 70357 |
| Nearest Unigene: | Mm.252514 |
| Nearest Refseq: | NM_027398 |
| Nearest Ensembl: | ENSMUSG00000053519 |
| Gene Name: | Kv channel-interacting protein 1 |
| Gene Alias: | KCHIP1 |
| Gene Description: | Kv channel-interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
