Difference between revisions of "TSS:Mm 101563.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000141450.1:0 uc007ikt.1:0 AK015529:0 |chr=chr11 |cpg_percent=0.035 |distance=0 |distance_to_tss=51347 |end=34098556 |entrez_id=16822 |gc_perce...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BB161688= | ||
| + | |SLP-76= | ||
| + | |SLP76= | ||
|all_trans=ENSMUST00000141450.1:0 uc007ikt.1:0 AK015529:0 | |all_trans=ENSMUST00000141450.1:0 uc007ikt.1:0 AK015529:0 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=51347 | |distance_to_tss=51347 | ||
|end=34098556 | |end=34098556 | ||
| + | |end_of_center_position=34098548 | ||
|entrez_id=16822 | |entrez_id=16822 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=AI323664 | + | |gene_alias=AI323664 |
|gene_description=lymphocyte cytosolic protein 2 | |gene_description=lymphocyte cytosolic protein 2 | ||
|gene_id=76874 | |gene_id=76874 | ||
| Line 17: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1924124 | |hgnc_mgi_id=MGI:1924124 | ||
| + | |m1Khoe= | ||
|nearest_ensembl=ENSMUSG00000002699 | |nearest_ensembl=ENSMUSG00000002699 | ||
|nearest_promoter_id=NM_010696 | |nearest_promoter_id=NM_010696 | ||
| Line 24: | Line 29: | ||
|species=mouse | |species=mouse | ||
|start=34098539 | |start=34098539 | ||
| + | |start_of_center_position=34098547 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000141450.1 uc007ikt.1 AK015529 | |transcript_name=ENSMUST00000141450.1 uc007ikt.1 AK015529 | ||
| Line 29: | Line 35: | ||
|tss_id=mm_101563.1 | |tss_id=mm_101563.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |twm= | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 23:07, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 34098547 |
|---|---|
| End of the center position in the TSS region: | 34098548 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000141450.1 uc007ikt.1 AK015529 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000141450.1:0 uc007ikt.1:0 AK015529:0 |
TATA-Box annotation
| Distance to TSS: | 51347 |
|---|---|
| Nearest PromoterID: | NM_010696 |
| Entrez ID: | 16822 |
| Nearest Unigene: | Mm.265350 |
| Nearest Refseq: | NM_010696 |
| Nearest Ensembl: | ENSMUSG00000002699 |
| Gene Name: | RIKEN cDNA 4930469K13 gene |
| Gene Alias: | AI323664 |
| Gene Description: | lymphocyte cytosolic protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
