Difference between revisions of "TSS:Mm 101708.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Gabrg-2= | ||
|all_trans=M62374:-2 AK034338:-8 NM_008073:-38 NM_177408:-38 uc007imb.2:-38 uc007imc.3:-38 uc007imd.2:-38 uc007ime.2:-38 ENSMUST00000070735.9:138 BC031762:138 M86572:163 ENSMUST00000070725.10:-181 ENSMUST00000109290.1:314 AK049857:314 AK141129:316 AF233775:340 AF233776:340 AF233777:340 AF233778:340 AF233779:340 AF233780:340 AF233781:340 AF233782:340 AF233783:340 AF233784:340 AF233785:340 AF233786:340 AF233787:340 AF233788:340 AF233789:340 AF233790:340 AF233791:340 AF233792:340 AF233793:340 AF233794:340 AF233795:340 AF233796:340 AF233797:340 AF233798:340 AF233799:340 AF233800:340 AF233801:340 AF233802:340 AK136889:351 AK047085:379 | |all_trans=M62374:-2 AK034338:-8 NM_008073:-38 NM_177408:-38 uc007imb.2:-38 uc007imc.3:-38 uc007imd.2:-38 uc007ime.2:-38 ENSMUST00000070735.9:138 BC031762:138 M86572:163 ENSMUST00000070725.10:-181 ENSMUST00000109290.1:314 AK049857:314 AK141129:316 AF233775:340 AF233776:340 AF233777:340 AF233778:340 AF233779:340 AF233780:340 AF233781:340 AF233782:340 AF233783:340 AF233784:340 AF233785:340 AF233786:340 AF233787:340 AF233788:340 AF233789:340 AF233790:340 AF233791:340 AF233792:340 AF233793:340 AF233794:340 AF233795:340 AF233796:340 AF233797:340 AF233798:340 AF233799:340 AF233800:340 AF233801:340 AF233802:340 AK136889:351 AK047085:379 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
|end=42000676 | |end=42000676 | ||
| + | |end_of_center_position=42000673 | ||
|entrez_id=14406 | |entrez_id=14406 | ||
| + | |gamma2= | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R |
|gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" | |gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" | ||
|gene_id=14406 | |gene_id=14406 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=42000669 | |start=42000669 | ||
| + | |start_of_center_position=42000672 | ||
|strand=- | |strand=- | ||
|transcript_name=M62374 | |transcript_name=M62374 | ||
Revision as of 23:26, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 42000672 |
|---|---|
| End of the center position in the TSS region: | 42000673 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | M62374 |
|---|---|
| Distance: | -2 |
| Num_trans: | 45 |
| All_trans: | M62374:-2 AK034338:-8 NM_008073:-38 NM_177408:-38 uc007imb.2:-38 uc007imc.3:-38 uc007imd.2:-38 uc007ime.2:-38 ENSMUST00000070735.9:138 BC031762:138 M86572:163 ENSMUST00000070725.10:-181 ENSMUST00000109290.1:314 AK049857:314 AK141129:316 AF233775:340 AF233776:340 AF233777:340 AF233778:340 AF233779:340 AF233780:340 AF233781:340 AF233782:340 AF233783:340 AF233784:340 AF233785:340 AF233786:340 AF233787:340 AF233788:340 AF233789:340 AF233790:340 AF233791:340 AF233792:340 AF233793:340 AF233794:340 AF233795:340 AF233796:340 AF233797:340 AF233798:340 AF233799:340 AF233800:340 AF233801:340 AF233802:340 AK136889:351 AK047085:379 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_177408 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | "gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" |
| Gene Alias: | GABAA-R |
| Gene Description: | "gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
