Difference between revisions of "TSS:Mm 101731.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Gabra-6= | ||
|all_trans=ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 uc007img.2:3 uc007imh.2:3 ENSMUST00000155218.8:24 AK135145:24 AK137331:24 ENSMUST00000020703.12:26 X51986:67 BC145158:285 BC145702:285 AF256197:307 AF256198:307 | |all_trans=ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 uc007img.2:3 uc007imh.2:3 ENSMUST00000155218.8:24 AK135145:24 AK137331:24 ENSMUST00000020703.12:26 X51986:67 BC145158:285 BC145702:285 AF256197:307 AF256198:307 | ||
| + | |alpha6= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
|end=42321083 | |end=42321083 | ||
| + | |end_of_center_position=42321079 | ||
|entrez_id=14399 | |entrez_id=14399 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=GABA-ARalpha6 | + | |gene_alias=GABA-ARalpha6 |
|gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6" | |gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6" | ||
|gene_id=14399 | |gene_id=14399 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=42321074 | |start=42321074 | ||
| + | |start_of_center_position=42321078 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000109286.3 NM_008068 NM_001099641 uc007img.2 uc007imh.2 | |transcript_name=ENSMUST00000109286.3 NM_008068 NM_001099641 uc007img.2 uc007imh.2 | ||
Revision as of 23:28, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 42321078 |
|---|---|
| End of the center position in the TSS region: | 42321079 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109286.3 NM_008068 NM_001099641 uc007img.2 uc007imh.2 |
|---|---|
| Distance: | 3 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000109286.3:3 NM_008068:3 NM_001099641:3 uc007img.2:3 uc007imh.2:3 ENSMUST00000155218.8:24 AK135145:24 AK137331:24 ENSMUST00000020703.12:26 X51986:67 BC145158:285 BC145702:285 AF256197:307 AF256198:307 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001099641 |
| Entrez ID: | 14399 |
| Nearest Unigene: | Mm.4915 |
| Nearest Refseq: | NM_008068 |
| Nearest Ensembl: | ENSMUSG00000020428 |
| Gene Name: | "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6" |
| Gene Alias: | GABA-ARalpha6 |
| Gene Description: | "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6" |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
