Difference between revisions of "TSS:Mm 160829.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK147632:-20 ENSMUST00000129474.1:-241 AK018280:-299 AF334144:-314 ENSMUST00000093166.10:-315 AK147971:-315 AK030397:-315 BC056974:-327 AK147586:-371 EN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |6430511D02Rik= | ||
| + | |AA930218= | ||
| + | |AU022376= | ||
| + | |Pir121= | ||
|all_trans=AK147632:-20 ENSMUST00000129474.1:-241 AK018280:-299 AF334144:-314 ENSMUST00000093166.10:-315 AK147971:-315 AK030397:-315 BC056974:-327 AK147586:-371 ENSMUST00000165599.8:-379 NM_001252460:-379 NM_133769:-379 uc007ioc.2:-379 uc007iob.2:-379 | |all_trans=AK147632:-20 ENSMUST00000129474.1:-241 AK018280:-299 AF334144:-314 ENSMUST00000093166.10:-315 AK147971:-315 AK030397:-315 BC056974:-327 AK147586:-371 ENSMUST00000165599.8:-379 NM_001252460:-379 NM_133769:-379 uc007ioc.2:-379 uc007iob.2:-379 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=379 | |distance_to_tss=379 | ||
|end=46311979 | |end=46311979 | ||
| + | |end_of_center_position=46311979 | ||
|entrez_id=76884 | |entrez_id=76884 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=1500004I01Rik | + | |gene_alias=1500004I01Rik |
|gene_description=cytoplasmic FMR1 interacting protein 2 | |gene_description=cytoplasmic FMR1 interacting protein 2 | ||
|gene_id=76884 | |gene_id=76884 | ||
| Line 17: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1924134 | |hgnc_mgi_id=MGI:1924134 | ||
| + | |mKIAA1168= | ||
|nearest_ensembl=ENSMUSG00000020340 | |nearest_ensembl=ENSMUSG00000020340 | ||
|nearest_promoter_id=NM_001252460 | |nearest_promoter_id=NM_001252460 | ||
| Line 24: | Line 30: | ||
|species=mouse | |species=mouse | ||
|start=46311978 | |start=46311978 | ||
| + | |start_of_center_position=46311978 | ||
|strand=- | |strand=- | ||
|tata_box="70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00)" | |tata_box="70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00)" | ||
Revision as of 23:46, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 46311978 |
|---|---|
| End of the center position in the TSS region: | 46311979 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK147632 |
|---|---|
| Distance: | -20 |
| Num_trans: | 14 |
| All_trans: | AK147632:-20 ENSMUST00000129474.1:-241 AK018280:-299 AF334144:-314 ENSMUST00000093166.10:-315 AK147971:-315 AK030397:-315 BC056974:-327 AK147586:-371 ENSMUST00000165599.8:-379 NM_001252460:-379 NM_133769:-379 uc007ioc.2:-379 uc007iob.2:-379 |
TATA-Box annotation
| Distance to TSS: | 379 |
|---|---|
| Nearest PromoterID: | NM_001252460 |
| Entrez ID: | 76884 |
| Nearest Unigene: | Mm.154358 |
| Nearest Refseq: | NM_133769 |
| Nearest Ensembl: | ENSMUSG00000020340 |
| Gene Name: | cytoplasmic FMR1 interacting protein 2 |
| Gene Alias: | 1500004I01Rik |
| Gene Description: | cytoplasmic FMR1 interacting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00)" |
