Difference between revisions of "TSS:Hg 103934.1"
From referenceTSS
| Line 6: | Line 6: | ||
|distance_to_tss=180 | |distance_to_tss=180 | ||
|end=13099600 | |end=13099600 | ||
| + | |end_of_center_position=13099593 | ||
|entrez_id=83643 | |entrez_id=83643 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=13099585 | |start=13099585 | ||
| + | |start_of_center_position=13099592 | ||
|strand=+ | |strand=+ | ||
|tata_box="55(GTATTTTAAAGC,-,0.00)" | |tata_box="55(GTATTTTAAAGC,-,0.00)" | ||
Revision as of 23:53, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 13099592 |
|---|---|
| End of the center position in the TSS region: | 13099593 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378764.6 uc057rtg.1 |
|---|---|
| Distance: | 3 |
| Num_trans: | 9 |
| All_trans: | ENST00000378764.6:3 uc057rtg.1:3 ENST00000263036.9:-137 uc057rtf.1:-137 AK055403:-137 NM_021980:482 NM_001008213:482 NM_001008212:482 NM_001008211:482 |
TATA-Box annotation
| Distance to TSS: | 180 |
|---|---|
| Nearest PromoterID: | NM_001282658 |
| Entrez ID: | 83643 |
| Nearest Unigene: | Hs.498720 |
| Nearest Refseq: | NM_031455 |
| Nearest Ensembl: | ENSG00000151468 |
| Gene Name: | optineurin |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "55(GTATTTTAAAGC,-,0.00)" |
