Personal tools

Difference between revisions of "TSS:Hg 109451.1"

From referenceTSS

Jump to: navigation, search
Line 6: Line 6:
 
|distance_to_tss=43
 
|distance_to_tss=43
 
|end=59362600
 
|end=59362600
 +
|end_of_center_position=59362552
 
|entrez_id=220965
 
|entrez_id=220965
 
|gc_percent=0.616915
 
|gc_percent=0.616915
Line 24: Line 25:
 
|species=human
 
|species=human
 
|start=59362502
 
|start=59362502
 +
|start_of_center_position=59362551
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805
 
|transcript_name=ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805

Revision as of 03:39, 12 May 2019

Basic information about the TSS

TSS ID:hg_109451.1
Species:human
Chr:chr10
TSS Classification:yes
Start:59362502
End:59362600
Strand:-
TSS Score:1
Start of the center position in the TSS region:59362551
End of the center position in the TSS region:59362552



Gene and protein annotation

Transcript_name:ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805
Distance:0
GeneID:220965
HGNC/MGI_ID:HGNC:19371
UniProt_ID:A0A087X0M7 A0A087X216 A0A087X2G4 A8K181 B7Z2K3 Q8NE31
Gene_name:family with sequence similarity 13 member C
Gene_symbol:FAM13C
Gene_synonyms:
Gene_source:HGNC:19371



Transcript annotation

Transcript_name:ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805
Distance:0
Num_trans:39
All_trans:ENST00000618804.4:0 ENST00000618427.4:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001166698:0 NM_198215:0 NM_001001971:0 uc031wie.2:0 uc031wid.2:0 uc057tjz.1:0 uc057tka.1:0 uc057tkb.1:0 uc031wif.2:0 uc031wig.2:0 uc057tkl.1:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 uc001jkp.4:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 uc057tkj.1:-101 ENST00000503444.1:-230 uc057tko.1:-230 ENST00000468840.6:-303 NM_001143773:-303 uc010qie.3:-303 AK299924:-303



TATA-Box annotation

Distance to TSS:43
Nearest PromoterID:NM_001347851
Entrez ID:220965
Nearest Unigene:Hs.607594
Nearest Refseq:NM_198215
Nearest Ensembl:ENSG00000148541
Gene Name:family with sequence similarity 13 member C
Gene Alias:FAM13C1
Gene Description:family with sequence similarity 13 member C
Gene Type:protein-coding
CpG%:0.065
GC%:0.616915
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_109451.1&oldid=804115"