Difference between revisions of "TSS:Hg 105361.1"
From referenceTSS
| Line 7: | Line 7: | ||
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
|end=69801885 | |end=69801885 | ||
| + | |end_of_center_position=69801880 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_id=1305 | |gene_id=1305 | ||
| Line 25: | Line 26: | ||
|species=human | |species=human | ||
|start=69801874 | |start=69801874 | ||
| + | |start_of_center_position=69801879 | ||
|strand=+ | |strand=+ | ||
|transcript_name=NM_080805 NM_080800 NM_080802 NM_080801 NM_001130103 NM_080798 | |transcript_name=NM_080805 NM_080800 NM_080802 NM_080801 NM_001130103 NM_080798 | ||
Revision as of 04:35, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 69801879 |
|---|---|
| End of the center position in the TSS region: | 69801880 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_080805 NM_080800 NM_080802 NM_080801 NM_001130103 NM_080798 |
|---|---|
| Distance: | 3 |
| Num_trans: | 21 |
| All_trans: | NM_080805:3 NM_080800:3 NM_080802:3 NM_080801:3 NM_001130103:3 NM_080798:3 BC139913:31 ENST00000479733.5:46 uc057tui.1:46 ENST00000398978.7:47 ENST00000354547.7:47 ENST00000357811.7:47 uc057tuj.1:47 uc057tuk.1:47 uc057tul.1:47 AJ293624:47 ENST00000520267.5:233 ENST00000398969.7:233 uc057tum.1:233 uc057tun.1:233 BC136385:233 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_080802 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
