Difference between revisions of "TSS:Hg 105363.1"
From referenceTSS
| Line 7: | Line 7: | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
|end=69801991 | |end=69801991 | ||
| + | |end_of_center_position=69801970 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_id=1305 | |gene_id=1305 | ||
| Line 25: | Line 26: | ||
|species=human | |species=human | ||
|start=69801948 | |start=69801948 | ||
| + | |start_of_center_position=69801969 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tuj.1 uc057tuk.1 uc057tul.1 AJ293624 | |transcript_name=ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tuj.1 uc057tuk.1 uc057tul.1 AJ293624 | ||
Revision as of 04:35, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69801969 |
|---|---|
| End of the center position in the TSS region: | 69801970 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tuj.1 uc057tuk.1 uc057tul.1 AJ293624 |
|---|---|
| Distance: | -17 |
| Num_trans: | 27 |
| All_trans: | ENST00000398978.7:-17 ENST00000354547.7:-17 ENST00000357811.7:-17 uc057tuj.1:-17 uc057tuk.1:-17 uc057tul.1:-17 AJ293624:-17 ENST00000479733.5:-18 uc057tui.1:-18 BC139913:-33 NM_080805:-61 NM_080800:-61 NM_080802:-61 NM_080801:-61 NM_001130103:-61 NM_080798:-61 ENST00000520267.5:127 ENST00000398969.7:127 uc057tum.1:127 uc057tun.1:127 BC136385:127 ENST00000517713.5:433 ENST00000522165.5:433 ENST00000520133.5:433 uc057tuo.1:433 uc057tup.1:433 uc057tuq.1:433 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_080805 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
