Difference between revisions of "TSS:Mm 99824.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 uc007mbu.2:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 |chr=chr11 |cpg_percen...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Axil= | ||
| + | |Conductin= | ||
|all_trans=BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 uc007mbu.2:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 | |all_trans=BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 uc007mbu.2:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=29 | |distance_to_tss=29 | ||
|end=108920384 | |end=108920384 | ||
| + | |end_of_center_position=108920378 | ||
|entrez_id=12006 | |entrez_id=12006 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=Axi1 | + | |gene_alias=Axi1 |
|gene_description=axin 2 | |gene_description=axin 2 | ||
|gene_id=12006 | |gene_id=12006 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=108920371 | |start=108920371 | ||
| + | |start_of_center_position=108920377 | ||
|strand=+ | |strand=+ | ||
|tata_box="-62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00)" | |tata_box="-62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00)" | ||
Revision as of 11:19, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108920377 |
|---|---|
| End of the center position in the TSS region: | 108920378 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC057338 |
|---|---|
| Distance: | -6 |
| Num_trans: | 8 |
| All_trans: | BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 uc007mbu.2:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_015732 |
| Entrez ID: | 12006 |
| Nearest Unigene: | Mm.71710 |
| Nearest Refseq: | NM_015732 |
| Nearest Ensembl: | ENSMUSG00000000142 |
| Gene Name: | axin 2 |
| Gene Alias: | Axi1 |
| Gene Description: | axin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00)" |
