Difference between revisions of "TSS:Mm 99896.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK150427:0 AK146380:0 AK049832:-1 AK151124:13 AK153227:13 BC005697:29 ENSMUST00000106676.7:46 uc029rpm.1:-68 HQ412668:-68 uc007mct.2:-346 AK158562:-346...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIalpha= | ||
| + | |Tse-1= | ||
| + | |Tse1= | ||
|all_trans=AK150427:0 AK146380:0 AK049832:-1 AK151124:13 AK153227:13 BC005697:29 ENSMUST00000106676.7:46 uc029rpm.1:-68 HQ412668:-68 uc007mct.2:-346 AK158562:-346 ENSMUST00000049527.6:392 NM_021880:392 NM_001313976:392 NM_001313975:392 uc007mcu.1:420 AK005039:420 AK053918:420 AK145797:420 AK051068:420 AK147188:432 AK083383:440 AK145860:453 AK027916:453 BC003461:461 | |all_trans=AK150427:0 AK146380:0 AK049832:-1 AK151124:13 AK153227:13 BC005697:29 ENSMUST00000106676.7:46 uc029rpm.1:-68 HQ412668:-68 uc007mct.2:-346 AK158562:-346 ENSMUST00000049527.6:392 NM_021880:392 NM_001313976:392 NM_001313975:392 uc007mcu.1:420 AK005039:420 AK053918:420 AK145797:420 AK051068:420 AK147188:432 AK083383:440 AK145860:453 AK027916:453 BC003461:461 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-402 | |distance_to_tss=-402 | ||
|end=109650529 | |end=109650529 | ||
| + | |end_of_center_position=109650519 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik |
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | |gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | ||
|gene_id=19084 | |gene_id=19084 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=109650508 | |start=109650508 | ||
| + | |start_of_center_position=109650518 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AK150427 AK146380 | |transcript_name=AK150427 AK146380 | ||
Revision as of 11:30, 12 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 109650518 |
|---|---|
| End of the center position in the TSS region: | 109650519 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK150427 AK146380 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | AK150427:0 AK146380:0 AK049832:-1 AK151124:13 AK153227:13 BC005697:29 ENSMUST00000106676.7:46 uc029rpm.1:-68 HQ412668:-68 uc007mct.2:-346 AK158562:-346 ENSMUST00000049527.6:392 NM_021880:392 NM_001313976:392 NM_001313975:392 uc007mcu.1:420 AK005039:420 AK053918:420 AK145797:420 AK051068:420 AK147188:432 AK083383:440 AK145860:453 AK027916:453 BC003461:461 |
TATA-Box annotation
| Distance to TSS: | -402 |
|---|---|
| Nearest PromoterID: | NM_021880 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Alias: | 1300018C22Rik |
| Gene Description: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
