Difference between revisions of "TSS:Mm 99898.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIalpha= | ||
| + | |Tse-1= | ||
| + | |Tse1= | ||
|all_trans=ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:342 NM_021880:342 NM_001313976:342 NM_001313975:342 uc007mcu.1:370 AK005039:370 AK053918:370 AK145797:370 AK051068:370 AK147188:382 AK083383:390 AK145860:403 AK027916:403 BC003461:411 uc007mct.2:-412 AK158562:-412 | |all_trans=ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:342 NM_021880:342 NM_001313976:342 NM_001313975:342 uc007mcu.1:370 AK005039:370 AK053918:370 AK145797:370 AK051068:370 AK147188:382 AK083383:390 AK145860:403 AK027916:403 BC003461:411 uc007mct.2:-412 AK158562:-412 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-344 | |distance_to_tss=-344 | ||
|end=109650579 | |end=109650579 | ||
| + | |end_of_center_position=109650577 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik |
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | |gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | ||
|gene_id=19084 | |gene_id=19084 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=109650574 | |start=109650574 | ||
| + | |start_of_center_position=109650576 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000106676.7 | |transcript_name=ENSMUST00000106676.7 | ||
Revision as of 11:30, 12 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 109650576 |
|---|---|
| End of the center position in the TSS region: | 109650577 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000106676.7 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENSMUST00000106676.7:0 BC005697:-17 AK151124:-33 AK153227:-33 AK146380:-62 AK150427:-66 AK049832:-67 uc029rpm.1:-134 HQ412668:-134 ENSMUST00000049527.6:342 NM_021880:342 NM_001313976:342 NM_001313975:342 uc007mcu.1:370 AK005039:370 AK053918:370 AK145797:370 AK051068:370 AK147188:382 AK083383:390 AK145860:403 AK027916:403 BC003461:411 uc007mct.2:-412 AK158562:-412 |
TATA-Box annotation
| Distance to TSS: | -344 |
|---|---|
| Nearest PromoterID: | NM_021880 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Alias: | 1300018C22Rik |
| Gene Description: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
