Difference between revisions of "TSS:Mm 100130.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |C230078O20= | ||
| + | |CD104= | ||
|all_trans=ENSMUST00000021107.13:154 L04678:154 ENSMUST00000169928.7:170 ENSMUST00000106461.7:170 NM_133663:170 NM_001005608:170 uc007mjf.1:170 uc007mjg.1:170 uc007mjh.1:170 uc007mji.1:170 AK147424:170 ENSMUST00000151691.7:288 AK048888:288 ENSMUST00000106460.8:424 AK142648:481 | |all_trans=ENSMUST00000021107.13:154 L04678:154 ENSMUST00000169928.7:170 ENSMUST00000106461.7:170 NM_133663:170 NM_001005608:170 uc007mjf.1:170 uc007mjg.1:170 uc007mjh.1:170 uc007mji.1:170 AK147424:170 ENSMUST00000151691.7:288 AK048888:288 ENSMUST00000106460.8:424 AK142648:481 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-172 | |distance_to_tss=-172 | ||
|end=115974555 | |end=115974555 | ||
| + | |end_of_center_position=115974553 | ||
|entrez_id=192897 | |entrez_id=192897 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=AA407042 | + | |gene_alias=AA407042 |
|gene_description=integrin beta 4 | |gene_description=integrin beta 4 | ||
|gene_id=192897 | |gene_id=192897 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=115974550 | |start=115974550 | ||
| + | |start_of_center_position=115974552 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000021107.13 L04678 | |transcript_name=ENSMUST00000021107.13 L04678 | ||
Revision as of 12:07, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 115974552 |
|---|---|
| End of the center position in the TSS region: | 115974553 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000021107.13 L04678 |
|---|---|
| Distance: | 154 |
| Num_trans: | 15 |
| All_trans: | ENSMUST00000021107.13:154 L04678:154 ENSMUST00000169928.7:170 ENSMUST00000106461.7:170 NM_133663:170 NM_001005608:170 uc007mjf.1:170 uc007mjg.1:170 uc007mjh.1:170 uc007mji.1:170 AK147424:170 ENSMUST00000151691.7:288 AK048888:288 ENSMUST00000106460.8:424 AK142648:481 |
TATA-Box annotation
| Distance to TSS: | -172 |
|---|---|
| Nearest PromoterID: | NM_001005608 |
| Entrez ID: | 192897 |
| Nearest Unigene: | Mm.213873 |
| Nearest Refseq: | NM_133663 |
| Nearest Ensembl: | ENSMUSG00000020758 |
| Gene Name: | integrin beta 4 |
| Gene Alias: | AA407042 |
| Gene Description: | integrin beta 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
