Difference between revisions of "TSS:Mm 100134.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000151691.7:-27 AK048888:-27 ENSMUST00000106460.8:103 ENSMUST00000169928.7:-145 ENSMUST00000106461.7:-145 NM_133663:-145 NM_001005608:-145 uc00...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C230078O20= | ||
| + | |CD104= | ||
|all_trans=ENSMUST00000151691.7:-27 AK048888:-27 ENSMUST00000106460.8:103 ENSMUST00000169928.7:-145 ENSMUST00000106461.7:-145 NM_133663:-145 NM_001005608:-145 uc007mjf.1:-145 uc007mjg.1:-145 uc007mjh.1:-145 uc007mji.1:-145 AK147424:-145 AK142648:160 ENSMUST00000021107.13:-161 L04678:-161 AK144947:186 | |all_trans=ENSMUST00000151691.7:-27 AK048888:-27 ENSMUST00000106460.8:103 ENSMUST00000169928.7:-145 ENSMUST00000106461.7:-145 NM_133663:-145 NM_001005608:-145 uc007mjf.1:-145 uc007mjg.1:-145 uc007mjh.1:-145 uc007mji.1:-145 AK147424:-145 AK142648:160 ENSMUST00000021107.13:-161 L04678:-161 AK144947:186 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=148 | |distance_to_tss=148 | ||
|end=115974876 | |end=115974876 | ||
| + | |end_of_center_position=115974873 | ||
|entrez_id=192897 | |entrez_id=192897 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=AA407042 | + | |gene_alias=AA407042 |
|gene_description=integrin beta 4 | |gene_description=integrin beta 4 | ||
|gene_id=192897 | |gene_id=192897 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=115974869 | |start=115974869 | ||
| + | |start_of_center_position=115974872 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000151691.7 AK048888 | |transcript_name=ENSMUST00000151691.7 AK048888 | ||
Revision as of 12:08, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 115974872 |
|---|---|
| End of the center position in the TSS region: | 115974873 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000151691.7 AK048888 |
|---|---|
| Distance: | -27 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000151691.7:-27 AK048888:-27 ENSMUST00000106460.8:103 ENSMUST00000169928.7:-145 ENSMUST00000106461.7:-145 NM_133663:-145 NM_001005608:-145 uc007mjf.1:-145 uc007mjg.1:-145 uc007mjh.1:-145 uc007mji.1:-145 AK147424:-145 AK142648:160 ENSMUST00000021107.13:-161 L04678:-161 AK144947:186 |
TATA-Box annotation
| Distance to TSS: | 148 |
|---|---|
| Nearest PromoterID: | NM_133663 |
| Entrez ID: | 192897 |
| Nearest Unigene: | Mm.213873 |
| Nearest Refseq: | NM_133663 |
| Nearest Ensembl: | ENSMUSG00000020758 |
| Gene Name: | integrin beta 4 |
| Gene Alias: | AA407042 |
| Gene Description: | integrin beta 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
