Difference between revisions of "TSS:Mm 100160.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000121547.1:33 |chr=chr11 |cpg_percent=0.03 |distance=33 |distance_to_tss=30321 |end=116382717 |entrez_id=217340 |gc_percent=0.457711 |gene_ali...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |A130073L17Rik= | ||
|all_trans=ENSMUST00000121547.1:33 | |all_trans=ENSMUST00000121547.1:33 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=30321 | |distance_to_tss=30321 | ||
|end=116382717 | |end=116382717 | ||
| + | |end_of_center_position=116382712 | ||
|entrez_id=217340 | |entrez_id=217340 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=2610036E23Rik | + | |gene_alias=2610036E23Rik |
|gene_description=ring finger protein 157 | |gene_description=ring finger protein 157 | ||
|gene_id= | |gene_id= | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3651796 | |hgnc_mgi_id=MGI:3651796 | ||
| + | |mKIAA1917= | ||
|nearest_ensembl=ENSMUSG00000052949 | |nearest_ensembl=ENSMUSG00000052949 | ||
|nearest_promoter_id=NM_027258 | |nearest_promoter_id=NM_027258 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=116382705 | |start=116382705 | ||
| + | |start_of_center_position=116382711 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000121547.1 | |transcript_name=ENSMUST00000121547.1 | ||
Revision as of 12:18, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 116382711 |
|---|---|
| End of the center position in the TSS region: | 116382712 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000121547.1 |
|---|---|
| Distance: | 33 |
| Num_trans: | 1 |
| All_trans: | ENSMUST00000121547.1:33 |
TATA-Box annotation
| Distance to TSS: | 30321 |
|---|---|
| Nearest PromoterID: | NM_027258 |
| Entrez ID: | 217340 |
| Nearest Unigene: | Mm.426344 |
| Nearest Refseq: | NM_027258 |
| Nearest Ensembl: | ENSMUSG00000052949 |
| Gene Name: | "ribosomal protein S11, pseudogene 2" |
| Gene Alias: | 2610036E23Rik |
| Gene Description: | ring finger protein 157 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
