Difference between revisions of "TSS:Mm 100170.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000100201.9:-86 NM_001172475:-86 uc007mlg.2:-86 AF068748:-86 AK216506:123 ENSMUST00000106387.8:-253 ENSMUST00000106386.7:430 NM_001172473:430 N...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Sk1= | ||
| + | |Spk1= | ||
|all_trans=ENSMUST00000100201.9:-86 NM_001172475:-86 uc007mlg.2:-86 AF068748:-86 AK216506:123 ENSMUST00000106387.8:-253 ENSMUST00000106386.7:430 NM_001172473:430 NM_001172472:430 uc007mlh.2:430 uc007mli.2:430 ENSMUST00000134834.7:437 AK028667:437 ENSMUST00000145737.7:440 AK160900:441 ENSMUST00000155102.7:443 AK155332:446 ENSMUST00000063446.12:459 | |all_trans=ENSMUST00000100201.9:-86 NM_001172475:-86 uc007mlg.2:-86 AF068748:-86 AK216506:123 ENSMUST00000106387.8:-253 ENSMUST00000106386.7:430 NM_001172473:430 NM_001172472:430 uc007mlh.2:430 uc007mli.2:430 ENSMUST00000134834.7:437 AK028667:437 ENSMUST00000145737.7:440 AK160900:441 ENSMUST00000155102.7:443 AK155332:446 ENSMUST00000063446.12:459 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=94 | |distance_to_tss=94 | ||
|end=116532014 | |end=116532014 | ||
| + | |end_of_center_position=116532006 | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=116531996 | |start=116531996 | ||
| + | |start_of_center_position=116532005 | ||
|strand=+ | |strand=+ | ||
|tata_box="54(GACTTTAAGAAG,-,0.00)" | |tata_box="54(GACTTTAAGAAG,-,0.00)" | ||
Revision as of 12:21, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 116532005 |
|---|---|
| End of the center position in the TSS region: | 116532006 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000100201.9 NM_001172475 uc007mlg.2 AF068748 |
|---|---|
| Distance: | -86 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000100201.9:-86 NM_001172475:-86 uc007mlg.2:-86 AF068748:-86 AK216506:123 ENSMUST00000106387.8:-253 ENSMUST00000106386.7:430 NM_001172473:430 NM_001172472:430 uc007mlh.2:430 uc007mli.2:430 ENSMUST00000134834.7:437 AK028667:437 ENSMUST00000145737.7:440 AK160900:441 ENSMUST00000155102.7:443 AK155332:446 ENSMUST00000063446.12:459 |
TATA-Box annotation
| Distance to TSS: | 94 |
|---|---|
| Nearest PromoterID: | NM_001172475 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "54(GACTTTAAGAAG,-,0.00)" |
