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Difference between revisions of "TSS:Mm 100172.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001172472:0 uc007m...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|Sk1=
 +
|Spk1=
 
|all_trans=ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001172472:0 uc007mlh.2:0 uc007mli.2:0 AK028667:0 AK160900:0 AK155332:0 AK216506:-305 ENSMUST00000063396.9:447
 
|all_trans=ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001172472:0 uc007mlh.2:0 uc007mli.2:0 AK028667:0 AK160900:0 AK155332:0 AK216506:-305 ENSMUST00000063396.9:447
 
|chr=chr11
 
|chr=chr11
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|distance_to_tss=16
 
|distance_to_tss=16
 
|end=116532478
 
|end=116532478
 +
|end_of_center_position=116532460
 
|entrez_id=20698
 
|entrez_id=20698
 
|gc_percent=0.616915
 
|gc_percent=0.616915
−
|gene_alias=1110006G24Rik|Sk1|Spk1
+
|gene_alias=1110006G24Rik
 
|gene_description=sphingosine kinase 1
 
|gene_description=sphingosine kinase 1
 
|gene_id=20698
 
|gene_id=20698
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|species=mouse
 
|species=mouse
 
|start=116532441
 
|start=116532441
 +
|start_of_center_position=116532459
 
|strand=+
 
|strand=+
 
|transcript_name=ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001172472 uc007mlh.2 uc007mli.2 AK028667 AK160900 AK155332
 
|transcript_name=ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001172472 uc007mlh.2 uc007mli.2 AK028667 AK160900 AK155332

Revision as of 12:21, 12 May 2019

Basic information about the TSS

TSS ID:mm_100172.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:116532441
End:116532478
Strand:+
TSS Score:1
Start of the center position in the TSS region:116532459
End of the center position in the TSS region:116532460



Gene and protein annotation

Transcript_name:ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001172472 uc007mlh.2 uc007mli.2 AK028667 AK160900 AK155332
Distance:0
GeneID:20698
HGNC/MGI_ID:MGI:1316649
UniProt_ID:B1AT85 B1AT88 Q8CI15
Gene_name:sphingosine kinase 1
Gene_symbol:Sphk1
Gene_synonyms:1110006G24Rik SK1
Gene_source:MGI:1316649



Transcript annotation

Transcript_name:ENSMUST00000106386.7 ENSMUST00000134834.7 ENSMUST00000145737.7 ENSMUST00000155102.7 ENSMUST00000063446.12 NM_001172473 NM_001172472 uc007mlh.2 uc007mli.2 AK028667 AK160900 AK155332
Distance:0
Num_trans:14
All_trans:ENSMUST00000106386.7:0 ENSMUST00000134834.7:0 ENSMUST00000145737.7:0 ENSMUST00000155102.7:0 ENSMUST00000063446.12:0 NM_001172473:0 NM_001172472:0 uc007mlh.2:0 uc007mli.2:0 AK028667:0 AK160900:0 AK155332:0 AK216506:-305 ENSMUST00000063396.9:447



TATA-Box annotation

Distance to TSS:16
Nearest PromoterID:NM_001172473
Entrez ID:20698
Nearest Unigene:Mm.20944
Nearest Refseq:NM_011451
Nearest Ensembl:ENSMUSG00000061878
Gene Name:sphingosine kinase 1
Gene Alias:1110006G24Rik
Gene Description:sphingosine kinase 1
Gene Type:protein-coding
CpG%:0.045
GC%:0.616915
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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