Difference between revisions of "TSS:Mm 100173.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 AK028667:-100 ENSMUST000...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Sk1= | ||
| + | |Spk1= | ||
|all_trans=ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 AK028667:-100 ENSMUST00000106386.7:-107 NM_001172473:-107 NM_001172472:-107 uc007mlh.2:-107 uc007mli.2:-107 ENSMUST00000063396.9:364 AK216506:-414 | |all_trans=ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 AK028667:-100 ENSMUST00000106386.7:-107 NM_001172473:-107 NM_001172472:-107 uc007mlh.2:-107 uc007mli.2:-107 ENSMUST00000063396.9:364 AK216506:-414 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=112 | |distance_to_tss=112 | ||
|end=116532561 | |end=116532561 | ||
| + | |end_of_center_position=116532556 | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=116532550 | |start=116532550 | ||
| + | |start_of_center_position=116532555 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000063446.12 | |transcript_name=ENSMUST00000063446.12 | ||
Revision as of 12:21, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116532555 |
|---|---|
| End of the center position in the TSS region: | 116532556 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000063446.12 |
|---|---|
| Distance: | -78 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000063446.12:-78 AK155332:-91 ENSMUST00000155102.7:-94 AK160900:-96 ENSMUST00000145737.7:-97 ENSMUST00000134834.7:-100 AK028667:-100 ENSMUST00000106386.7:-107 NM_001172473:-107 NM_001172472:-107 uc007mlh.2:-107 uc007mli.2:-107 ENSMUST00000063396.9:364 AK216506:-414 |
TATA-Box annotation
| Distance to TSS: | 112 |
|---|---|
| Nearest PromoterID: | NM_001172473 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
