Difference between revisions of "TSS:Mm 100176.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK136289:77 AK197304:180 ENSMUST00000148185.1:188 ENSMUST00000124682.7:-388 |chr=chr11 |cpg_percent=0.05 |distance=77 |distance_to_tss=729 |end=11653397...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Sk1= | ||
| + | |Spk1= | ||
|all_trans=AK136289:77 AK197304:180 ENSMUST00000148185.1:188 ENSMUST00000124682.7:-388 | |all_trans=AK136289:77 AK197304:180 ENSMUST00000148185.1:188 ENSMUST00000124682.7:-388 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=729 | |distance_to_tss=729 | ||
|end=116533972 | |end=116533972 | ||
| + | |end_of_center_position=116533968 | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=116533962 | |start=116533962 | ||
| + | |start_of_center_position=116533967 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AK136289 | |transcript_name=AK136289 | ||
Revision as of 12:22, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 116533967 |
|---|---|
| End of the center position in the TSS region: | 116533968 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK136289 |
|---|---|
| Distance: | 77 |
| Num_trans: | 4 |
| All_trans: | AK136289:77 AK197304:180 ENSMUST00000148185.1:188 ENSMUST00000124682.7:-388 |
TATA-Box annotation
| Distance to TSS: | 729 |
|---|---|
| Nearest PromoterID: | NM_025367 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
