Difference between revisions of "TSS:Mm 100227.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK213489:-34 |chr=chr11 |cpg_percent=0.03 |distance=-34 |distance_to_tss=28669 |end=117143865 |entrez_id=74136 |gc_percent=0.567164 |gene_alias=1200017E...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |2810012L19Rik= | ||
| + | |Naa-35= | ||
|all_trans=AK213489:-34 | |all_trans=AK213489:-34 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=28669 | |distance_to_tss=28669 | ||
|end=117143865 | |end=117143865 | ||
| + | |end_of_center_position=117143841 | ||
|entrez_id=74136 | |entrez_id=74136 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=1200017E04Rik | + | |gene_alias=1200017E04Rik |
|gene_description=SEC14-like lipid binding 1 | |gene_description=SEC14-like lipid binding 1 | ||
|gene_id=74136 | |gene_id=74136 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=117143816 | |start=117143816 | ||
| + | |start_of_center_position=117143840 | ||
|strand=+ | |strand=+ | ||
|tata_box="-70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00)" | |tata_box="-70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00)" | ||
Revision as of 12:32, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 117143840 |
|---|---|
| End of the center position in the TSS region: | 117143841 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK213489 |
|---|---|
| Distance: | -34 |
| Num_trans: | 1 |
| All_trans: | AK213489:-34 |
TATA-Box annotation
| Distance to TSS: | 28669 |
|---|---|
| Nearest PromoterID: | NM_001166506 |
| Entrez ID: | 74136 |
| Nearest Unigene: | Mm.272312 |
| Nearest Refseq: | NM_028777 |
| Nearest Ensembl: | ENSMUSG00000020823 |
| Gene Name: | SEC14-like lipid binding 1 |
| Gene Alias: | 1200017E04Rik |
| Gene Description: | SEC14-like lipid binding 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00)" |
