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Difference between revisions of "TSS:Mm 100231.1"

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(Created page with "{{TSSDetail |all_trans=AK141312:0 BC094455:9 ENSMUST00000093907.10:-43 NM_001113486:-43 uc007mnd.2:-43 BC046524:-43 |chr=chr11 |cpg_percent=0.12 |distance=0 |distance_to_tss=5...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|Msf=
 +
|PNUTL4=
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|Sint1=
 
|all_trans=AK141312:0 BC094455:9 ENSMUST00000093907.10:-43 NM_001113486:-43 uc007mnd.2:-43 BC046524:-43
 
|all_trans=AK141312:0 BC094455:9 ENSMUST00000093907.10:-43 NM_001113486:-43 uc007mnd.2:-43 BC046524:-43
 
|chr=chr11
 
|chr=chr11
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|distance_to_tss=55
 
|distance_to_tss=55
 
|end=117199729
 
|end=117199729
 +
|end_of_center_position=117199717
 
|entrez_id=53860
 
|entrez_id=53860
 
|gc_percent=0.751244
 
|gc_percent=0.751244
|gene_alias=MSF1|Msf|PNUTL4|Sint1
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|gene_alias=MSF1
 
|gene_description=septin 9
 
|gene_description=septin 9
 
|gene_id=53860
 
|gene_id=53860
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|species=mouse
 
|species=mouse
 
|start=117199703
 
|start=117199703
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|start_of_center_position=117199716
 
|strand=+
 
|strand=+
 
|transcript_name=AK141312
 
|transcript_name=AK141312

Revision as of 12:32, 12 May 2019

Basic information about the TSS


TSS ID:mm_100231.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:117199703
End:117199729
Strand:+
TSS Score:1
Start of the center position in the TSS region:117199716
End of the center position in the TSS region:117199717



Gene and protein annotation


Transcript_name:AK141312
Distance:0
GeneID:53860
HGNC/MGI_ID:MGI:1858222
UniProt_ID:
Gene_name:septin 9
Gene_symbol:9-Sep
Gene_synonyms:MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sint1
Gene_source:MGI:1858222



Transcript annotation


Transcript_name:AK141312
Distance:0
Num_trans:6
All_trans:AK141312:0 BC094455:9 ENSMUST00000093907.10:-43 NM_001113486:-43 uc007mnd.2:-43 BC046524:-43



TATA-Box annotation


Distance to TSS:55
Nearest PromoterID:NM_001113486
Entrez ID:53860
Nearest Unigene:Mm.38450
Nearest Refseq:NM_017380
Nearest Ensembl:ENSMUSG00000059248
Gene Name:septin 9
Gene Alias:MSF1
Gene Description:septin 9
Gene Type:protein-coding
CpG%:0.12
GC%:0.751244
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):