Difference between revisions of "TSS:Mm 100258.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001113488:29 uc007mng.2:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 |chr=chr11 |cpg_percent=0.05 |dist...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Msf= | ||
| + | |PNUTL4= | ||
| + | |Sint1= | ||
|all_trans=NM_001113488:29 uc007mng.2:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 | |all_trans=NM_001113488:29 uc007mng.2:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-32 | |distance_to_tss=-32 | ||
|end=117332284 | |end=117332284 | ||
| + | |end_of_center_position=117332281 | ||
|entrez_id=53860 | |entrez_id=53860 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=MSF1 | + | |gene_alias=MSF1 |
|gene_description=septin 9 | |gene_description=septin 9 | ||
|gene_id=53860 | |gene_id=53860 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=117332277 | |start=117332277 | ||
| + | |start_of_center_position=117332280 | ||
|strand=+ | |strand=+ | ||
|transcript_name=NM_001113488 uc007mng.2 | |transcript_name=NM_001113488 uc007mng.2 | ||
Revision as of 12:34, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 117332280 |
|---|---|
| End of the center position in the TSS region: | 117332281 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001113488 uc007mng.2 |
|---|---|
| Distance: | 29 |
| Num_trans: | 7 |
| All_trans: | NM_001113488:29 uc007mng.2:29 ENSMUST00000106349.1:61 AK170048:136 ENSMUST00000155331.7:144 AK164581:144 AK031757:154 |
TATA-Box annotation
| Distance to TSS: | -32 |
|---|---|
| Nearest PromoterID: | NM_001113488 |
| Entrez ID: | 53860 |
| Nearest Unigene: | Mm.38450 |
| Nearest Refseq: | NM_017380 |
| Nearest Ensembl: | ENSMUSG00000059248 |
| Gene Name: | septin 9 |
| Gene Alias: | MSF1 |
| Gene Description: | septin 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
