Difference between revisions of "TSS:Mm 100269.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000026658.12:31 NM_198022:31 uc007mni.2:31 ENSMUST00000141115.7:315 AK147551:315 AK147471:476 |chr=chr11 |cpg_percent=0.16 |distance=31 |distan...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-54 | |distance_to_tss=-54 | ||
|end=117654258 | |end=117654258 | ||
| + | |end_of_center_position=117654235 | ||
|entrez_id=217351 | |entrez_id=217351 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=9930033H14Rik | + | |gene_alias=9930033H14Rik |
|gene_description=trinucleotide repeat containing 6C | |gene_description=trinucleotide repeat containing 6C | ||
|gene_id=217351 | |gene_id=217351 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2443265 | |hgnc_mgi_id=MGI:2443265 | ||
| + | |mKIAA1582= | ||
|nearest_ensembl=ENSMUSG00000025571 | |nearest_ensembl=ENSMUSG00000025571 | ||
|nearest_promoter_id=NM_198022 | |nearest_promoter_id=NM_198022 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=117654211 | |start=117654211 | ||
| + | |start_of_center_position=117654234 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000026658.12 NM_198022 uc007mni.2 | |transcript_name=ENSMUST00000026658.12 NM_198022 uc007mni.2 | ||
Revision as of 12:35, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 117654234 |
|---|---|
| End of the center position in the TSS region: | 117654235 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000026658.12 NM_198022 uc007mni.2 |
|---|---|
| Distance: | 31 |
| Num_trans: | 6 |
| All_trans: | ENSMUST00000026658.12:31 NM_198022:31 uc007mni.2:31 ENSMUST00000141115.7:315 AK147551:315 AK147471:476 |
TATA-Box annotation
| Distance to TSS: | -54 |
|---|---|
| Nearest PromoterID: | NM_198022 |
| Entrez ID: | 217351 |
| Nearest Unigene: | Mm.40272 |
| Nearest Refseq: | NM_198022 |
| Nearest Ensembl: | ENSMUSG00000025571 |
| Gene Name: | trinucleotide repeat containing 6C |
| Gene Alias: | 9930033H14Rik |
| Gene Description: | trinucleotide repeat containing 6C |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
