Difference between revisions of "TSS:Mm 100318.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.025 |distance= |distance_to_tss=617 |end=117987479 |entrez_id=74451 |gc_percent=0.437811 |gene_alias=2610019F11Rik|4933424M23Rik|SAF |gen...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |4933424M23Rik= | ||
| + | |SAF= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 5: | Line 7: | ||
|distance_to_tss=617 | |distance_to_tss=617 | ||
|end=117987479 | |end=117987479 | ||
| + | |end_of_center_position=117987474 | ||
|entrez_id=74451 | |entrez_id=74451 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=2610019F11Rik | + | |gene_alias=2610019F11Rik |
|gene_description=phosphatidylglycerophosphate synthase 1 | |gene_description=phosphatidylglycerophosphate synthase 1 | ||
|gene_name=Pgs1 | |gene_name=Pgs1 | ||
| Line 18: | Line 21: | ||
|species=mouse | |species=mouse | ||
|start=117987468 | |start=117987468 | ||
| + | |start_of_center_position=117987473 | ||
|strand=+ | |strand=+ | ||
|tata_box="-35(GTCCTTTAAAGG,-,0.00),-34(TCCTTTAAAGGA,+,0.00),-34(TCCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAA,+,0.00)" | |tata_box="-35(GTCCTTTAAAGG,-,0.00),-34(TCCTTTAAAGGA,+,0.00),-34(TCCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAA,+,0.00)" | ||
Revision as of 12:42, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 117987473 |
|---|---|
| End of the center position in the TSS region: | 117987474 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 617 |
|---|---|
| Nearest PromoterID: | NM_133757 |
| Entrez ID: | 74451 |
| Nearest Unigene: | Mm.28864 |
| Nearest Refseq: | NM_133757 |
| Nearest Ensembl: | ENSMUSG00000017715 |
| Gene Name: | Pgs1 |
| Gene Alias: | 2610019F11Rik |
| Gene Description: | phosphatidylglycerophosphate synthase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GTCCTTTAAAGG,-,0.00),-34(TCCTTTAAAGGA,+,0.00),-34(TCCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAA,+,0.00)" |
