Difference between revisions of "TSS:Mm 100411.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc007mqo.1:40 U76755:40 U76754:40 |chr=chr11 |cpg_percent=0.025 |distance=40 |distance_to_tss=35543 |end=119426022 |entrez_id=100316690 |gc_percent=0.42...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=35543 | |distance_to_tss=35543 | ||
|end=119426022 | |end=119426022 | ||
| + | |end_of_center_position=119426016 | ||
|entrez_id=100316690 | |entrez_id=100316690 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias= | + | |gene_alias=mir-1932 |
|gene_description=microRNA 1932 | |gene_description=microRNA 1932 | ||
|gene_id=672511 | |gene_id=672511 | ||
| Line 17: | Line 18: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:1289196 | |hgnc_mgi_id=MGI:1289196 | ||
| + | |mmu-mir-1932= | ||
|nearest_ensembl=ENSMUSG00000088015 | |nearest_ensembl=ENSMUSG00000088015 | ||
|nearest_promoter_id=NR_035453 | |nearest_promoter_id=NR_035453 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=119426008 | |start=119426008 | ||
| + | |start_of_center_position=119426015 | ||
|strand=+ | |strand=+ | ||
|tata_box="-32(TTTTTTATAGTC,+,0.00)" | |tata_box="-32(TTTTTTATAGTC,+,0.00)" | ||
Revision as of 13:03, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 119426015 |
|---|---|
| End of the center position in the TSS region: | 119426016 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | uc007mqo.1 U76755 U76754 |
|---|---|
| Distance: | 40 |
| Num_trans: | 3 |
| All_trans: | uc007mqo.1:40 U76755:40 U76754:40 |
TATA-Box annotation
| Distance to TSS: | 35543 |
|---|---|
| Nearest PromoterID: | NR_035453 |
| Entrez ID: | 100316690 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_035453 |
| Nearest Ensembl: | ENSMUSG00000088015 |
| Gene Name: | ring finger protein 213 |
| Gene Alias: | mir-1932 |
| Gene Description: | microRNA 1932 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(TTTTTTATAGTC,+,0.00)" |
