Difference between revisions of "TSS:Mm 100496.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Hrs= | ||
| + | |ZFYVE8= | ||
|all_trans=AK195076:-60 AK145031:-85 BC003239:-110 D50050:-116 AK046299:-126 AK166441:-139 ENSMUST00000141826.1:-166 ENSMUST00000140862.6:-166 ENSMUST00000106205.7:-166 ENSMUST00000106203.7:-166 ENSMUST00000026900.13:-166 NM_001159328:-166 NM_008244:-166 uc007msx.2:-166 uc007msz.2:-166 uc007msy.2:-166 | |all_trans=AK195076:-60 AK145031:-85 BC003239:-110 D50050:-116 AK046299:-126 AK166441:-139 ENSMUST00000141826.1:-166 ENSMUST00000140862.6:-166 ENSMUST00000106205.7:-166 ENSMUST00000106203.7:-166 ENSMUST00000026900.13:-166 NM_001159328:-166 NM_008244:-166 uc007msx.2:-166 uc007msz.2:-166 uc007msy.2:-166 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=179 | |distance_to_tss=179 | ||
|end=120467827 | |end=120467827 | ||
| + | |end_of_center_position=120467814 | ||
|entrez_id=15239 | |entrez_id=15239 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=Hgr | + | |gene_alias=Hgr |
|gene_description=HGF-regulated tyrosine kinase substrate | |gene_description=HGF-regulated tyrosine kinase substrate | ||
|gene_id=15239 | |gene_id=15239 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=120467800 | |start=120467800 | ||
| + | |start_of_center_position=120467813 | ||
|strand=+ | |strand=+ | ||
| + | |tn= | ||
|transcript_name=AK195076 | |transcript_name=AK195076 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 13:15, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 120467813 |
|---|---|
| End of the center position in the TSS region: | 120467814 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK195076 |
|---|---|
| Distance: | -60 |
| Num_trans: | 16 |
| All_trans: | AK195076:-60 AK145031:-85 BC003239:-110 D50050:-116 AK046299:-126 AK166441:-139 ENSMUST00000141826.1:-166 ENSMUST00000140862.6:-166 ENSMUST00000106205.7:-166 ENSMUST00000106203.7:-166 ENSMUST00000026900.13:-166 NM_001159328:-166 NM_008244:-166 uc007msx.2:-166 uc007msz.2:-166 uc007msy.2:-166 |
TATA-Box annotation
| Distance to TSS: | 179 |
|---|---|
| Nearest PromoterID: | NM_001159328 |
| Entrez ID: | 15239 |
| Nearest Unigene: | Mm.7919 |
| Nearest Refseq: | NM_008244 |
| Nearest Ensembl: | ENSMUSG00000025793 |
| Gene Name: | HGF-regulated tyrosine kinase substrate |
| Gene Alias: | Hgr |
| Gene Description: | HGF-regulated tyrosine kinase substrate |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
