Difference between revisions of "TSS:Hg 233277.1"
From referenceTSS
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{{peakPage | {{peakPage | ||
| − | |all_trans= | + | |all_trans=NR_024540:-4 ENST00000488147.1:-204 |
|species=human | |species=human | ||
| − | |chr= | + | |chr=chr14 |
| − | |cpg_percent= | + | |cpg_percent=0.04 |
| − | |distance= | + | |distance=-4 |
| − | |distance_to_tss= | + | |distance_to_tss=20585 |
| − | |end= | + | |end=73364786 |
| − | |entrez_id= | + | |entrez_id=16432 |
| − | |gc_percent= | + | |gc_percent=0.502488 |
| − | |gene_alias= | + | |gene_alias=AI256040,Bri,Bri2,Bricd2b,D14Sel6,E25BMM,imBRI2 |
| − | |gene_description= | + | |gene_description=integral membrane protein 2B |
| − | |gene_id= | + | |gene_id=653635 |
| − | |gene_name= | + | |gene_name=Itm2b |
| − | |gene_source= | + | |gene_source=HGNC:38034 |
| − | |gene_symbol= | + | |gene_symbol=WASH7P |
| − | |gene_synonyms= | + | |gene_synonyms=FAM39F |
| − | |gene_type= | + | |gene_type=protein-coding |
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:38034 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000022108 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_008410 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_008410 |
| − | |nearest_unigene= | + | |nearest_unigene=Mm.4266 |
|num_trans=0 | |num_trans=0 | ||
|peak_id=hg_233277.1 | |peak_id=hg_233277.1 | ||
| − | |peak_score= | + | |peak_score=1 |
| − | |start= | + | |start=73364586 |
| − | |strand= | + | |strand=- |
| − | |tata_box= | + | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_024540 |
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:48, 7 February 2018
Basic information about the TSS
|
Gene and protein annotation
|
Transcript annotation
| Transcript_name: | NR_024540 |
|---|---|
| Distance: | -4 |
| Num_trans: | 0 |
| All_trans: | :NR_024540:-4 ENST00000488147.1:-204 |
TATA-Box annotation
| Distance to TSS: | 20585 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | Itm2b |
| Gene Alias: | AI256040,Bri,Bri2,Bricd2b,D14Sel6,E25BMM,imBRI2 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
