Difference between revisions of "TSS:Hg 143377.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000554558.5:0 ENST00000412224.6:0 ENST00000535211.1:0 NR_027123:0 uc059btj.1:0 uc001xbz.3:0 uc059btl.1:0 AK124927:0 JX046911:0 JX628584:0 ENST0000...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MYCLo-3= | ||
|all_trans=ENST00000554558.5:0 ENST00000412224.6:0 ENST00000535211.1:0 NR_027123:0 uc059btj.1:0 uc001xbz.3:0 uc059btl.1:0 AK124927:0 JX046911:0 JX628584:0 ENST00000335142.5:3 uc001xca.4:3 BX248296:3 | |all_trans=ENST00000554558.5:0 ENST00000412224.6:0 ENST00000535211.1:0 NR_027123:0 uc059btj.1:0 uc001xbz.3:0 uc059btl.1:0 AK124927:0 JX046911:0 JX628584:0 ENST00000335142.5:3 uc001xca.4:3 BX248296:3 | ||
|chr=chr14 | |chr=chr14 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-7 | |distance_to_tss=-7 | ||
|end=55580121 | |end=55580121 | ||
| + | |end_of_center_position=55580099 | ||
|entrez_id=100129075 | |entrez_id=100129075 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=C14orf33 | + | |gene_alias=C14orf33 |
|gene_description=KTN1 antisense RNA 1 | |gene_description=KTN1 antisense RNA 1 | ||
|gene_id=100129075 | |gene_id=100129075 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=55580076 | |start=55580076 | ||
| + | |start_of_center_position=55580098 | ||
|strand=- | |strand=- | ||
|tata_box="-46(GCCCCTTAAAGG,-,0.00),-45(CCCCTTAAAGGG,+,0.00),-45(CCCCTTAAAGGG,-,0.00),-44(CCCTTAAAGGGA,+,0.00),-43(CCTTAAAGGGAC,+,0.00)" | |tata_box="-46(GCCCCTTAAAGG,-,0.00),-45(CCCCTTAAAGGG,+,0.00),-45(CCCCTTAAAGGG,-,0.00),-44(CCCTTAAAGGGA,+,0.00),-43(CCTTAAAGGGAC,+,0.00)" | ||
Revision as of 01:28, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 55580098 |
|---|---|
| End of the center position in the TSS region: | 55580099 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000554558.5 ENST00000412224.6 ENST00000535211.1 NR_027123 uc059btj.1 uc001xbz.3 uc059btl.1 AK124927 JX046911 JX628584 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000554558.5:0 ENST00000412224.6:0 ENST00000535211.1:0 NR_027123:0 uc059btj.1:0 uc001xbz.3:0 uc059btl.1:0 AK124927:0 JX046911:0 JX628584:0 ENST00000335142.5:3 uc001xca.4:3 BX248296:3 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NR_027123 |
| Entrez ID: | 100129075 |
| Nearest Unigene: | Hs.633724 |
| Nearest Refseq: | NR_027123 |
| Nearest Ensembl: | ENSG00000186615 |
| Gene Name: | KTN1 antisense RNA 1 |
| Gene Alias: | C14orf33 |
| Gene Description: | KTN1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.15 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-46(GCCCCTTAAAGG,-,0.00),-45(CCCCTTAAAGGG,+,0.00),-45(CCCCTTAAAGGG,-,0.00),-44(CCCTTAAAGGGA,+,0.00),-43(CCTTAAAGGGAC,+,0.00)" |
