Difference between revisions of "TSS:Hg 57591.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000623223.1:-297 uc063fka.1:-297 AK126015:-297 |chr=chr5 |cpg_percent=0.025 |distance=-297 |distance_to_tss=17319 |end=93600658 |entrez_id=7025 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BBSOAS= | ||
| + | |COUP-TFI= | ||
| + | |EAR-3= | ||
| + | |EAR3= | ||
| + | |ERBAL3= | ||
| + | |NR2F2= | ||
| + | |SVP44= | ||
| + | |TCFCOUP1= | ||
| + | |TFCOUP1= | ||
|all_trans=ENST00000623223.1:-297 uc063fka.1:-297 AK126015:-297 | |all_trans=ENST00000623223.1:-297 uc063fka.1:-297 AK126015:-297 | ||
|chr=chr5 | |chr=chr5 | ||
| Line 6: | Line 15: | ||
|distance_to_tss=17319 | |distance_to_tss=17319 | ||
|end=93600658 | |end=93600658 | ||
| + | |end_of_center_position=93600656 | ||
|entrez_id=7025 | |entrez_id=7025 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=BBOAS | + | |gene_alias=BBOAS |
|gene_description=nuclear receptor subfamily 2 group F member 1 | |gene_description=nuclear receptor subfamily 2 group F member 1 | ||
|gene_id=100131066 | |gene_id=100131066 | ||
| Line 24: | Line 34: | ||
|species=human | |species=human | ||
|start=93600653 | |start=93600653 | ||
| + | |start_of_center_position=93600655 | ||
|strand=+ | |strand=+ | ||
|tata_box="-33(TCCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGG,+,0.00),-32(CCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGA,+,0.00)" | |tata_box="-33(TCCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGG,+,0.00),-32(CCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGA,+,0.00)" | ||
Revision as of 07:17, 14 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 93600655 |
|---|---|
| End of the center position in the TSS region: | 93600656 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000623223.1 uc063fka.1 AK126015 |
|---|---|
| Distance: | -297 |
| Num_trans: | 3 |
| All_trans: | ENST00000623223.1:-297 uc063fka.1:-297 AK126015:-297 |
TATA-Box annotation
| Distance to TSS: | 17319 |
|---|---|
| Nearest PromoterID: | NM_005654 |
| Entrez ID: | 7025 |
| Nearest Unigene: | Hs.519445 |
| Nearest Refseq: | NM_005654 |
| Nearest Ensembl: | ENSG00000175745 |
| Gene Name: | uncharacterized LOC100131066 |
| Gene Alias: | BBOAS |
| Gene Description: | nuclear receptor subfamily 2 group F member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(TCCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGG,+,0.00),-32(CCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGA,+,0.00)" |
