Difference between revisions of "TSS:Hg 169184.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000343820.9:0 uc002kly.5:0 ENST00000405385.7:-47 NM_173209:-47 NM_173208:-47 NM_001278684:-47 uc002klx.5:-47 ENST00000551557.1:-161 uc060myb.1:-16...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |TGIF= |
| + | |all_trans=NM_001278684:0 NM_173208:0 NM_173209:0 ENST00000405385.7:-47 NM_001278682:-130 ENST00000551557.1:-161 ENST00000407501.6:168 ENST00000549253.5:-285 ENST00000546979.5:322 ENST00000343820.10:458 NM_003244:458 ENST00000551402.1:463 AK309471:463 X89750:477 ENST00000577543.5:498 | ||
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=55 | |distance_to_tss=55 | ||
|end=3449714 | |end=3449714 | ||
| + | |end_of_center_position=3449706 | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=3449697 | |start=3449697 | ||
| + | |start_of_center_position=3449705 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_173209.3 NM_001278684.2 NM_173208.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_169184.1 | |tss_id=hg_169184.1 | ||
Latest revision as of 18:40, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3449705 |
|---|---|
| End of the center position in the TSS region: | 3449706 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_173209.3 NM_001278684.2 NM_173208.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | NM_001278684:0 NM_173208:0 NM_173209:0 ENST00000405385.7:-47 NM_001278682:-130 ENST00000551557.1:-161 ENST00000407501.6:168 ENST00000549253.5:-285 ENST00000546979.5:322 ENST00000343820.10:458 NM_003244:458 ENST00000551402.1:463 AK309471:463 X89750:477 ENST00000577543.5:498 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_173209 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
