Difference between revisions of "TSS:Hg 74867.1"
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{{TSSDetail | {{TSSDetail | ||
|LINC00577= | |LINC00577= | ||
| + | |all_trans=HGNC:21553 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|dJ439I14.1= | |dJ439I14.1= | ||
| − | |distance= | + | |distance=-71 |
|distance_to_tss=-843 | |distance_to_tss=-843 | ||
|end=104941376 | |end=104941376 | ||
| Line 10: | Line 11: | ||
|entrez_id=100113403 | |entrez_id=100113403 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=C6orf220 | + | |gene_alias=C6orf220{{!}}LINC00577{{!}}dJ439I14.1 |
|gene_description=LIN28B antisense RNA 1 | |gene_description=LIN28B antisense RNA 1 | ||
| − | |gene_name=LIN28B-AS1 | + | |gene_id=100113403 |
| + | |gene_name=LIN28B antisense RNA 1 | ||
| + | |gene_source=HGNC:21553 | ||
| + | |gene_symbol=LIN28B-AS1 | ||
| + | |gene_synonyms=dJ439I14.1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:21553 | ||
|nearest_ensembl=ENSG00000203809 | |nearest_ensembl=ENSG00000203809 | ||
|nearest_promoter_id=NR_046407 | |nearest_promoter_id=NR_046407 | ||
|nearest_refseq=NR_046407 | |nearest_refseq=NR_046407 | ||
|nearest_unigene=Hs.649249 | |nearest_unigene=Hs.649249 | ||
| − | |num_trans= | + | |num_trans=100113403 |
|species=human | |species=human | ||
|start=104941363 | |start=104941363 | ||
|start_of_center_position=104941369 | |start_of_center_position=104941369 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000636951.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_74867.1 | |tss_id=hg_74867.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 09:38, 22 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 104941369 |
|---|---|
| End of the center position in the TSS region: | 104941370 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000636951.1 |
|---|---|
| Distance: | -71 |
| Num_trans: | 100113403 |
| All_trans: | HGNC:21553 |
TATA-Box annotation
| Distance to TSS: | -843 |
|---|---|
| Nearest PromoterID: | NR_046407 |
| Entrez ID: | 100113403 |
| Nearest Unigene: | Hs.649249 |
| Nearest Refseq: | NR_046407 |
| Nearest Ensembl: | ENSG00000203809 |
| Gene Name: | LIN28B antisense RNA 1 |
| Gene Alias: | C6orf220|LINC00577|dJ439I14.1 |
| Gene Description: | LIN28B antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
