Difference between revisions of "TSS:Hg 171329.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000584201.1:5 uc060nvn.1:5 ENST00000579431.1:-29 uc060nvm.1:-29 ENST00000584373.1:433 uc060nvl.1:433 |chr=chr18 |cpg_percent=0.09 |distance=5 |dis...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:48840 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=586 | |distance_to_tss=586 | ||
|end=22168389 | |end=22168389 | ||
| + | |end_of_center_position=22168382 | ||
|entrez_id=100128893 | |entrez_id=100128893 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=BM742401 | + | |gene_alias=BM742401{{!}}locus5689 |
|gene_description=GATA6 antisense RNA 1 (head to head) | |gene_description=GATA6 antisense RNA 1 (head to head) | ||
|gene_id=100128893 | |gene_id=100128893 | ||
| Line 14: | Line 15: | ||
|gene_source=HGNC:48840 | |gene_source=HGNC:48840 | ||
|gene_symbol=GATA6-AS1 | |gene_symbol=GATA6-AS1 | ||
| − | |gene_synonyms=locus5689 | + | |gene_synonyms=BM742401 locus5689 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48840 | |hgnc_mgi_id=HGNC:48840 | ||
| + | |locus5689= | ||
|nearest_ensembl=ENSG00000266010 | |nearest_ensembl=ENSG00000266010 | ||
|nearest_promoter_id=NR_102763 | |nearest_promoter_id=NR_102763 | ||
|nearest_refseq=NR_102763 | |nearest_refseq=NR_102763 | ||
|nearest_unigene=Hs.514745 | |nearest_unigene=Hs.514745 | ||
| − | |num_trans= | + | |num_trans=100128893 |
|species=human | |species=human | ||
|start=22168374 | |start=22168374 | ||
| + | |start_of_center_position=22168381 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000584201 | + | |transcript_name=ENST00000584201.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171329.1 | |tss_id=hg_171329.1 | ||
Latest revision as of 19:26, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22168381 |
|---|---|
| End of the center position in the TSS region: | 22168382 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000584201.1 |
|---|---|
| Distance: | 5 |
| Num_trans: | 100128893 |
| All_trans: | HGNC:48840 |
TATA-Box annotation
| Distance to TSS: | 586 |
|---|---|
| Nearest PromoterID: | NR_102763 |
| Entrez ID: | 100128893 |
| Nearest Unigene: | Hs.514745 |
| Nearest Refseq: | NR_102763 |
| Nearest Ensembl: | ENSG00000266010 |
| Gene Name: | GATA6 antisense RNA 1 (head to head) |
| Gene Alias: | BM742401|locus5689 |
| Gene Description: | GATA6 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.09 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
