Difference between revisions of "TSS:Hg 169168.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TGIF= | |TGIF= | ||
| − | |all_trans= | + | |all_trans=NM_174886:0 ENST00000401449.5:-81 ENST00000547233.1:193 ENST00000552383.5:-400 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=82 | |distance_to_tss=82 | ||
|end=3412011 | |end=3412011 | ||
| Line 10: | Line 10: | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=3412007 | |start=3412007 | ||
|start_of_center_position=3412009 | |start_of_center_position=3412009 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_174886.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_169168.1 | |tss_id=hg_169168.1 | ||
Latest revision as of 18:40, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3412009 |
|---|---|
| End of the center position in the TSS region: | 3412010 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_174886.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | NM_174886:0 ENST00000401449.5:-81 ENST00000547233.1:193 ENST00000552383.5:-400 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_174886 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
