Difference between revisions of "TSS:Hg 169185.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TGIF= | |TGIF= | ||
| − | |all_trans= | + | |all_trans=NM_001278684:-16 NM_173208:-16 NM_173209:-16 ENST00000405385.7:-72 ENST00000407501.6:131 NM_001278682:-155 ENST00000551557.1:-186 ENST00000546979.5:285 ENST00000549253.5:-310 ENST00000343820.10:421 NM_003244:421 ENST00000551402.1:426 AK309471:426 X89750:440 ENST00000577543.5:461 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance=- | + | |distance=-16 |
|distance_to_tss=86 | |distance_to_tss=86 | ||
|end=3449751 | |end=3449751 | ||
| Line 10: | Line 10: | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=3449722 | |start=3449722 | ||
|start_of_center_position=3449736 | |start_of_center_position=3449736 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_173209.3 NM_001278684.2 NM_173208.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_169185.1 | |tss_id=hg_169185.1 | ||
Latest revision as of 18:40, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3449736 |
|---|---|
| End of the center position in the TSS region: | 3449737 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_173209.3 NM_001278684.2 NM_173208.3 |
|---|---|
| Distance: | -16 |
| Num_trans: | 15 |
| All_trans: | NM_001278684:-16 NM_173208:-16 NM_173209:-16 ENST00000405385.7:-72 ENST00000407501.6:131 NM_001278682:-155 ENST00000551557.1:-186 ENST00000546979.5:285 ENST00000549253.5:-310 ENST00000343820.10:421 NM_003244:421 ENST00000551402.1:426 AK309471:426 X89750:440 ENST00000577543.5:461 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_173209 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
