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* [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki] | * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Combating_spam Learn how to combat spam on your wiki] | ||
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| − | + | <div style="border: medium solid #ff80ff;margin: 30px 30px;padding: 10px;display:none"> | |
| + | “NOTICE: Our server will be undergoing scheduled maintenance from May 26, 3 PM, until May 29, 1 PM. | ||
| + | </div> | ||
| + | <div style="border: medium solid #ff00ff;margin: 30px 30px;padding: 10px;display:none"> | ||
| + | Dear refTSS user,<br> | ||
| + | Due to routine server maintenance , refTSS server will not be reachable | ||
| + | during the following date: <br> | ||
| + | <p><b>Date: July, 29th (Mon), 2019 ; Time: 13:00 - 15:00 (Japan Standard Time, | ||
| + | GMT+9)</b></p> | ||
| + | The server will remain available after the restart. <br> | ||
| + | If you have any question please contact us at reftss-help<at>riken.jp .<br> | ||
| + | Thank you for using refTSS | ||
| + | </div> | ||
| + | <!-- add toc 2021.8.11 --> | ||
| + | <html> | ||
| + | <div id="toc" class="toc"><div class="toctitle" lang="en" dir="ltr"><h2>Contents</h2></div> | ||
| + | <ul> | ||
| + | <li class="toclevel-1 tocsection-1"><a href="#refTSS:_reference_transcription_start_site"><span class="tocnumber">1</span> <span class="toctext">refTSS: reference transcription start site</span></a> | ||
| + | <ul> | ||
| + | <li class="toclevel-2 tocsection-2"><a href="#Data_files"><span class="tocnumber">1.1</span> <span class="toctext">Data files</span></a></li> | ||
| + | <li class="toclevel-2 tocsection-3"><a href="#UCSC_genome_browser_Track_Hubs"><span class="tocnumber">1.2</span> <span class="toctext">UCSC genome browser Track Hubs</span></a></li> | ||
| + | <li class="toclevel-2 tocsection-4"><a href="#Contact"><span class="tocnumber">1.3</span> <span class="toctext">Contact</span></a></li> | ||
| + | <li class="toclevel-2 tocsection-5"><a href="http://reftss.riken.jp/reftss/Release_notes"><span class="tocnumber">1.4</span> <span class="toctext">Release notes</span></a></li> | ||
| + | </ul> | ||
| + | </li> | ||
| + | </ul> | ||
| + | </div></html> | ||
| + | __NOTOC__ | ||
| + | <!-- add toc end --> | ||
= refTSS: reference transcription start site = | = refTSS: reference transcription start site = | ||
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== Data files == | == Data files == | ||
| − | The raw refTSS data files are available at [http://reftss | + | The raw refTSS data files are available at [http://reftss.riken.jp/datafiles the data download page]. |
== UCSC genome browser Track Hubs == | == UCSC genome browser Track Hubs == | ||
| − | + | 1- [http://genome.ucsc.edu/cgi-bin/hgHubConnect?hubSearchTerms=refTss refTSS UCSC Genome Browser public track hub description pages] | |
| + | |||
| + | 2- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.riken.jp/trackhub/hub.txt&genome=hg38&position=lastDbPos Human refTSS track hub] | ||
| + | |||
| + | 3- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.riken.jp/trackhub/hub.txt&genome=mm10&position=lastDbPos Mouse refTSS track hub] | ||
== Contact == | == Contact == | ||
If you have any questions or comments, please contact to reftss-help<at>riken.jp . ("<at>" should be replaced with "@") | If you have any questions or comments, please contact to reftss-help<at>riken.jp . ("<at>" should be replaced with "@") | ||
| − | |||
== Please cite refTSS as: == | == Please cite refTSS as: == | ||
| − | Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). "refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites." J Mol Biol. doi: 10.1016/j.jmb.2019.04.045. | + | Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). "refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites." J Mol Biol. doi: <html><a href='https://doi.org/10.1016/j.jmb.2019.04.045' target='_blank'>10.1016/j.jmb.2019.04.045.</a></html> |
Latest revision as of 16:08, 26 May 2023
Contents
refTSS: reference transcription start site
The refTSS is an annotated reference dataset for transcriptional start sites (TSS) in human and mouse. The dataset is generated by collecting, reprocessing and assembling various public resources.
Data files
The raw refTSS data files are available at the data download page.
UCSC genome browser Track Hubs
1- refTSS UCSC Genome Browser public track hub description pages
Contact
If you have any questions or comments, please contact to reftss-help<at>riken.jp . ("<at>" should be replaced with "@")
Please cite refTSS as:
Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). "refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites." J Mol Biol. doi: 10.1016/j.jmb.2019.04.045.
