Difference between revisions of "TSS:Hg 101923.1"
From referenceTSS
| Line 2: | Line 2: | ||
|TRX= | |TRX= | ||
|TRX1= | |TRX1= | ||
| − | |all_trans= | + | |all_trans=HGNC:12435 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| − | |num_trans= | + | |num_trans=7295 |
|species=human | |species=human | ||
|start=110256499 | |start=110256499 | ||
| Line 30: | Line 30: | ||
|strand=- | |strand=- | ||
|tata_box=-34(CAGTTTATAAAG,-,0.00),-32(GTTTATAAAGGG,+,0.00),-32(GTTTATAAAGGG,-,0.00) | |tata_box=-34(CAGTTTATAAAG,-,0.00),-32(GTTTATAAAGGG,+,0.00),-32(GTTTATAAAGGG,-,0.00) | ||
| − | |transcript_name=ENST00000374517.6 | + | |transcript_name=ENST00000374517.6 X77584 BC054866 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_101923.1 | |tss_id=hg_101923.1 | ||
Latest revision as of 18:15, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 110256507 |
|---|---|
| End of the center position in the TSS region: | 110256508 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374517.6 X77584 BC054866 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7295 |
| All_trans: | HGNC:12435 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001244938 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX|TRX|TRX1 |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CAGTTTATAAAG,-,0.00),-32(GTTTATAAAGGG,+,0.00),-32(GTTTATAAAGGG,-,0.00) |
