Difference between revisions of "TSS:Hg 232223.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:11320 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=-3 | |distance=-3 | ||
|distance_to_tss=68426 | |distance_to_tss=68426 | ||
| − | |end= | + | |end=26861084 |
|end_of_center_position=26861082 | |end_of_center_position=26861082 | ||
|entrez_id=10771 | |entrez_id=10771 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_006624 | |nearest_refseq=NM_006624 | ||
|nearest_unigene=Hs.292265 | |nearest_unigene=Hs.292265 | ||
| − | |num_trans= | + | |num_trans=10006 |
|species=human | |species=human | ||
| − | |start= | + | |start=26861079 |
|start_of_center_position=26861081 | |start_of_center_position=26861081 | ||
|strand=- | |strand=- | ||
|tata_box=81(GTTCCTAAAAGG,-,0.00) | |tata_box=81(GTTCCTAAAAGG,-,0.00) | ||
| − | |transcript_name=ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 | + | |transcript_name=ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232223.1 | |tss_id=hg_232223.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B6VEX3 B6VEX4 Q8IZP0 | |uniprot_id=B6VEX3 B6VEX4 Q8IZP0 | ||
}} | }} | ||
Latest revision as of 11:06, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 26861081 |
|---|---|
| End of the center position in the TSS region: | 26861082 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 |
|---|---|
| Distance: | -3 |
| Num_trans: | 10006 |
| All_trans: | HGNC:11320 |
TATA-Box annotation
| Distance to TSS: | 68426 |
|---|---|
| Nearest PromoterID: | NM_001202467 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | abl interactor 1 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 81(GTTCCTAAAAGG,-,0.00) |
