Difference between revisions of "TSS:Hg 232302.1"
From referenceTSS
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|PDZK4= | |PDZK4= | ||
|PDZK5C= | |PDZK5C= | ||
| − | |all_trans= | + | |all_trans=HGNC:19736 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-107 | |distance=-107 | ||
|distance_to_tss=62748 | |distance_to_tss=62748 | ||
| − | |end= | + | |end=49133901 |
|end_of_center_position=49133901 | |end_of_center_position=49133901 | ||
|entrez_id=143162 | |entrez_id=143162 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_152428 | |nearest_refseq=NM_152428 | ||
|nearest_unigene=Hs.664786 | |nearest_unigene=Hs.664786 | ||
| − | |num_trans= | + | |num_trans=170370 |
|species=human | |species=human | ||
| − | |start= | + | |start=49133900 |
|start_of_center_position=49133900 | |start_of_center_position=49133900 | ||
| − | |strand= | + | |strand=- |
|tata_box=75(CATTTTTAAAGG,-,0.00) | |tata_box=75(CATTTTTAAAGG,-,0.00) | ||
|transcript_name=BC029839 | |transcript_name=BC029839 | ||
Latest revision as of 11:07, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 49133900 |
|---|---|
| End of the center position in the TSS region: | 49133901 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC029839 |
|---|---|
| Distance: | -107 |
| Num_trans: | 170370 |
| All_trans: | HGNC:19736 |
TATA-Box annotation
| Distance to TSS: | 62748 |
|---|---|
| Nearest PromoterID: | NM_001042512 |
| Entrez ID: | 143162 |
| Nearest Unigene: | Hs.664786 |
| Nearest Refseq: | NM_152428 |
| Nearest Ensembl: | ENSG00000170324 |
| Gene Name: | family with sequence similarity 170 member B |
| Gene Alias: | PDZD5C|PDZK4|PDZK5C |
| Gene Description: | FERM and PDZ domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 75(CATTTTTAAAGG,-,0.00) |
