Difference between revisions of "TSS:Hg 232425.1"
From referenceTSS
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| Line 9: | Line 9: | ||
|SPA2= | |SPA2= | ||
|SPAII= | |SPAII= | ||
| − | |all_trans= | + | |all_trans=HGNC:19255 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=-16 | |distance=-16 | ||
|distance_to_tss=556 | |distance_to_tss=556 | ||
| − | |end= | + | |end=80132518 |
|end_of_center_position=80132518 | |end_of_center_position=80132518 | ||
|entrez_id=729238 | |entrez_id=729238 | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_001098668 | |nearest_refseq=NM_001098668 | ||
|nearest_unigene=Hs.523084 | |nearest_unigene=Hs.523084 | ||
| − | |num_trans= | + | |num_trans=219348 |
|species=human | |species=human | ||
| − | |start= | + | |start=80132517 |
|start_of_center_position=80132517 | |start_of_center_position=80132517 | ||
|strand=+ | |strand=+ | ||
|tata_box=-58(CTCCTGAAAAGG,-,0.00) | |tata_box=-58(CTCCTGAAAAGG,-,0.00) | ||
|transcript_name=BC066348 BC090922 | |transcript_name=BC066348 BC090922 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232425.1 | |tss_id=hg_232425.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:10, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80132517 |
|---|---|
| End of the center position in the TSS region: | 80132518 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC066348 BC090922 |
|---|---|
| Distance: | -16 |
| Num_trans: | 219348 |
| All_trans: | HGNC:19255 |
TATA-Box annotation
| Distance to TSS: | 556 |
|---|---|
| Nearest PromoterID: | NM_001320814 |
| Entrez ID: | 729238 |
| Nearest Unigene: | Hs.523084 |
| Nearest Refseq: | NM_001098668 |
| Nearest Ensembl: | ENSG00000185303 |
| Gene Name: | placenta associated 9 |
| Gene Alias: | COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII |
| Gene Description: | surfactant protein A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -58(CTCCTGAAAAGG,-,0.00) |
