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Difference between revisions of "TSS:Hg 236365.1"

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Line 3: Line 3:
 
|HPA1S=
 
|HPA1S=
 
|all_trans=ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28
 
|all_trans=ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28
−
|chr=chr16
+
|chr=chr17
 
|cpg_percent=0.01
 
|cpg_percent=0.01
 
|distance=NA
 
|distance=NA
 
|distance_to_tss=36
 
|distance_to_tss=36
−
|end=72054636
+
|end=10652537
 
|end_of_center_position=10652530
 
|end_of_center_position=10652530
 
|entrez_id=3240
 
|entrez_id=3240
Line 26: Line 26:
 
|num_trans=0
 
|num_trans=0
 
|species=human
 
|species=human
−
|start=72054619
+
|start=10652521
 
|start_of_center_position=10652529
 
|start_of_center_position=10652529
 
|strand=+
 
|strand=+

Latest revision as of 10:08, 14 July 2021

Basic information about the TSS

TSS ID:hg_236365.1
Species:human
Chr:chr17
TSS Classification:no
Start:10652521
End:10652537
Strand:+
TSS Score:1
Start of the center position in the TSS region:10652529
End of the center position in the TSS region:10652530



Gene and protein annotation

Transcript_name:
Distance:NA
GeneID:3240
HGNC/MGI_ID:HGNC:5141
UniProt_ID:A0A087WU08 A0A0C4DGL8 B3KP77 H0Y300 H3BMJ7 H3BS21 J3QQI8 P00738 Q6NSB4
Gene_name:HP
Gene_symbol:HP
Gene_synonyms:
Gene_source:HGNC:5141



Transcript annotation

Transcript_name:
Distance:NA
Num_trans:0
All_trans:ENST00000565807.6:0 ENST00000562488.5:0 ENST00000569639.5:0 ENST00000564499.5:0 ENST00000357763.8:0 ENST00000613898.1:0 ENST00000566821.1:0 ENST00000562526.5:0 ENST00000565574.5:0 uc059wxz.1:0 uc059wya.1:0 uc059wyb.1:0 uc059wyc.1:0 uc059wyd.1:0 uc059wye.1:0 uc059wyf.1:0 uc059wyg.1:0 uc002fbt.7:0 AK314700:0 BC107587:0 BC058031:0 BC070299:0 AK055872:0 BC017862:0 K01763:0 L29394:0 BC121124:0 BC121125:0 ENST00000568417.6:2 uc059wyh.1:2 X00637:3 K00422:5 ENST00000228226.12:-11 ENST00000398131.6:-11 uc059wxx.1:-11 uc059wxy.1:-11 ENST00000355906.9:-25 uc002fbr.5:-25 ENST00000570083.5:-28 NM_001126102:-28 NM_001318138:-28 NM_005143:-28 uc010cgm.4:-28



TATA-Box annotation

Distance to TSS:36
Nearest PromoterID:NM_001126102
Entrez ID:3240
Nearest Unigene:Hs.513711
Nearest Refseq:NM_005143
Nearest Ensembl:ENSG00000257017
Gene Name:HP
Gene Alias:BP|HP2ALPHA2|HPA1S
Gene Description:haptoglobin
Gene Type:protein-coding
CpG%:0.01
GC%:0.492537
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-37(CAGCATAAAAAG,-,0.00),-35(GCATAAAAAGAC,+,0.00)
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