Difference between revisions of "TSS:Hg 236953.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:29279 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=34 | |distance=34 | ||
|distance_to_tss=17940 | |distance_to_tss=17940 | ||
| − | |end= | + | |end=81399706 |
|end_of_center_position=81399706 | |end_of_center_position=81399706 | ||
|entrez_id=5718 | |entrez_id=5718 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_002816 | |nearest_refseq=NM_002816 | ||
|nearest_unigene=Hs.4295 | |nearest_unigene=Hs.4295 | ||
| − | |num_trans= | + | |num_trans=57597 |
|p55= | |p55= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=81399705 |
|start_of_center_position=81399705 | |start_of_center_position=81399705 | ||
|strand=+ | |strand=+ | ||
|tata_box=-38(TCTTTTATAGTT,+,0.00) | |tata_box=-38(TCTTTTATAGTT,+,0.00) | ||
|transcript_name=ENST00000307745.8 | |transcript_name=ENST00000307745.8 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_236953.1 | |tss_id=hg_236953.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=F8WBW8 | |uniprot_id=F8WBW8 | ||
}} | }} | ||
Latest revision as of 12:49, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 81399705 |
|---|---|
| End of the center position in the TSS region: | 81399706 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000307745.8 |
|---|---|
| Distance: | 34 |
| Num_trans: | 57597 |
| All_trans: | HGNC:29279 |
TATA-Box annotation
| Distance to TSS: | 17940 |
|---|---|
| Nearest PromoterID: | NM_002816 |
| Entrez ID: | 5718 |
| Nearest Unigene: | Hs.4295 |
| Nearest Refseq: | NM_002816 |
| Nearest Ensembl: | ENSG00000197170 |
| Gene Name: | BAH domain and coiled-coil containing 1 |
| Gene Alias: | Rpn5|STISS|p55 |
| Gene Description: | proteasome 26S subunit, non-ATPase 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -38(TCTTTTATAGTT,+,0.00) |
