Difference between revisions of "TSS:Hg 240767.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|PP3105= | |PP3105= | ||
|ZIP8= | |ZIP8= | ||
| − | |all_trans= | + | |all_trans=HGNC:13716 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=46 | |distance=46 | ||
|distance_to_tss=107 | |distance_to_tss=107 | ||
| − | |end= | + | |end=5525110 |
|end_of_center_position=5525110 | |end_of_center_position=5525110 | ||
|entrez_id=64116 | |entrez_id=64116 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_022154 | |nearest_refseq=NM_022154 | ||
|nearest_unigene=Hs.288034 | |nearest_unigene=Hs.288034 | ||
| − | |num_trans= | + | |num_trans=10141 |
|species=human | |species=human | ||
| − | |start= | + | |start=5525109 |
|start_of_center_position=5525109 | |start_of_center_position=5525109 | ||
| − | |strand= | + | |strand=+ |
| − | |transcript_name=ENST00000623565.3 | + | |transcript_name=ENST00000623565.3 D82070 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_240767.1 | |tss_id=hg_240767.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:11, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5525109 |
|---|---|
| End of the center position in the TSS region: | 5525110 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623565.3 D82070 |
|---|---|
| Distance: | 46 |
| Num_trans: | 10141 |
| All_trans: | HGNC:13716 |
TATA-Box annotation
| Distance to TSS: | 107 |
|---|---|
| Nearest PromoterID: | NM_001135146 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | long intergenic non-protein coding RNA 1587 |
| Gene Alias: | BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
