Difference between revisions of "TSS:Hg 240852.1"
From referenceTSS
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| Line 9: | Line 9: | ||
|MNS= | |MNS= | ||
|PAS-2= | |PAS-2= | ||
| − | |all_trans= | + | |all_trans=HGNC:34343 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=461 | |distance=461 | ||
|distance_to_tss=25975 | |distance_to_tss=25975 | ||
| − | |end= | + | |end=76213579 |
|end_of_center_position=76213576 | |end_of_center_position=76213576 | ||
|entrez_id=2993 | |entrez_id=2993 | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_002099 | |nearest_refseq=NM_002099 | ||
|nearest_unigene=Hs.434973 | |nearest_unigene=Hs.434973 | ||
| − | |num_trans= | + | |num_trans=100129583 |
|species=human | |species=human | ||
| − | |start= | + | |start=76213571 |
|start_of_center_position=76213575 | |start_of_center_position=76213575 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000510197.5 | + | |transcript_name=ENST00000510197.5 AK124936 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_240852.1 | |tss_id=hg_240852.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q6ZV65 | |uniprot_id=Q6ZV65 | ||
}} | }} | ||
Latest revision as of 14:13, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 76213575 |
|---|---|
| End of the center position in the TSS region: | 76213576 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000510197.5 AK124936 |
|---|---|
| Distance: | 461 |
| Num_trans: | 100129583 |
| All_trans: | HGNC:34343 |
TATA-Box annotation
| Distance to TSS: | 25975 |
|---|---|
| Nearest PromoterID: | NM_001308187 |
| Entrez ID: | 2993 |
| Nearest Unigene: | Hs.434973 |
| Nearest Refseq: | NM_002099 |
| Nearest Ensembl: | ENSG00000170180 |
| Gene Name: | family with sequence similarity 47 member E |
| Gene Alias: | CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 |
| Gene Description: | glycophorin A (MNS blood group) |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
