Difference between revisions of "TSS:Hg 242193.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:3490 |
| − | |chr= | + | |chr=chr7 |
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=13 | |distance=13 | ||
|distance_to_tss=22053 | |distance_to_tss=22053 | ||
| − | |end= | + | |end=13991438 |
|end_of_center_position=13991438 | |end_of_center_position=13991438 | ||
|entrez_id=100847048 | |entrez_id=100847048 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_049873 | |nearest_refseq=NR_049873 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=2115 |
|species=human | |species=human | ||
| − | |start= | + | |start=13991437 |
|start_of_center_position=13991437 | |start_of_center_position=13991437 | ||
| − | |strand= | + | |strand=- |
|tata_box=-17(CCTTTAATACTC,+,0.00) | |tata_box=-17(CCTTTAATACTC,+,0.00) | ||
| − | |transcript_name=ENST00000242066.9 ENST00000421381.5 | + | |transcript_name=ENST00000242066.9 ENST00000421381.5 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242193.1 | |tss_id=hg_242193.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=C9J4P4 P50549 | |uniprot_id=C9J4P4 P50549 | ||
}} | }} | ||
Latest revision as of 14:42, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13991437 |
|---|---|
| End of the center position in the TSS region: | 13991438 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000242066.9 ENST00000421381.5 |
|---|---|
| Distance: | 13 |
| Num_trans: | 2115 |
| All_trans: | HGNC:3490 |
TATA-Box annotation
| Distance to TSS: | 22053 |
|---|---|
| Nearest PromoterID: | NR_049873 |
| Entrez ID: | 100847048 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_049873 |
| Nearest Ensembl: | ENSG00000265527 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | - |
| Gene Description: | microRNA 5690 |
| Gene Type: | ncRNA |
| CpG%: | 0 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -17(CCTTTAATACTC,+,0.00) |
