Difference between revisions of "TSS:Hg 243070.1"
From referenceTSS
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|SMAPME= | |SMAPME= | ||
|all_trans=NM_001083885:144 ENST00000265134.10:186 AL110228:186 | |all_trans=NM_001083885:144 ENST00000265134.10:186 AL110228:186 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=144 | |distance=144 | ||
|distance_to_tss=55 | |distance_to_tss=55 | ||
| − | |end= | + | |end=114503359 |
|end_of_center_position=114503359 | |end_of_center_position=114503359 | ||
|entrez_id=427 | |entrez_id=427 | ||
| Line 29: | Line 29: | ||
|num_trans=3 | |num_trans=3 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=114503358 |
|start_of_center_position=114503358 | |start_of_center_position=114503358 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name=NM_001083885 | + | |transcript_name=NM_001083885.3 |
| − | |tss_classification= | + | |tss_classification=no |
|tss_id=hg_243070.1 | |tss_id=hg_243070.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q9P202 | |uniprot_id=Q9P202 | ||
}} | }} | ||
Latest revision as of 15:01, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 114503358 |
|---|---|
| End of the center position in the TSS region: | 114503359 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001083885.3 |
|---|---|
| Distance: | 144 |
| Num_trans: | 3 |
| All_trans: | NM_001083885:144 ENST00000265134.10:186 AL110228:186 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_177924 |
| Entrez ID: | 427 |
| Nearest Unigene: | Hs.527412 |
| Nearest Refseq: | NM_004315 |
| Nearest Ensembl: | ENSG00000104763 |
| Gene Name: | whirlin |
| Gene Alias: | AC|ACDase|ASAH|PHP|PHP32|SMAPME |
| Gene Description: | N-acylsphingosine amidohydrolase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
