Difference between revisions of "TSS:Hg 623.1"
From referenceTSS
| Line 32: | Line 32: | ||
|strand=+ | |strand=+ | ||
|tata_box=37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00) | |tata_box=37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00) | ||
| − | |transcript_name=NM_001304791 | + | |transcript_name=NM_183412.3 NM_001304791.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_623.1 | |tss_id=hg_623.1 | ||
Latest revision as of 05:06, 22 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654413 |
|---|---|
| End of the center position in the TSS region: | 11654414 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_183412.3 NM_001304791.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | NM_001304791:0 NM_183412:0 ENST00000251546.8:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NR_130909:432 NM_001304790:432 NM_001330355:432 NM_001014765:432 NM_183413:432 CR749368:444 ENST00000251547.10:452 NM_033182:452 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 AK316347:475 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 BC007832:485 AK294053:500 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_183412 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 44 |
| Gene Alias: | FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00) |
