Difference between revisions of "TSS:Hg 100946.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-238 |entrez_id=100507540 |gc_percent=0.527363 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1504 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=NA | ||
|distance_to_tss=-238 | |distance_to_tss=-238 | ||
| + | |end=72305209 | ||
| + | |end_of_center_position=72305198 | ||
|entrez_id=100507540 | |entrez_id=100507540 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 9: | Line 13: | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|nearest_ensembl=ENSG00000225434 | |nearest_ensembl=ENSG00000225434 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_110953 |
|nearest_refseq=NR_110952 | |nearest_refseq=NR_110952 | ||
|nearest_unigene=Hs.54957 | |nearest_unigene=Hs.54957 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=72305186 | ||
| + | |start_of_center_position=72305197 | ||
| + | |strand=- | ||
| + | |tata_box=37(CCTTATCTACCC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_100946.1 | |tss_id=hg_100946.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 15:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72305197 |
|---|---|
| End of the center position in the TSS region: | 72305198 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -238 |
|---|---|
| Nearest PromoterID: | NR_110953 |
| Entrez ID: | 100507540 |
| Nearest Unigene: | Hs.54957 |
| Nearest Refseq: | NR_110952 |
| Nearest Ensembl: | ENSG00000225434 |
| Gene Name: | LINC01504 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1504 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(CCTTATCTACCC,+,0.00) |
