Difference between revisions of "TSS:Hg 10100.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-13646 |entrez_id=102724539 |gc_percent=0.472637 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1714 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=NA | ||
|distance_to_tss=-13646 | |distance_to_tss=-13646 | ||
| + | |end=8195029 | ||
| + | |end_of_center_position=8195027 | ||
|entrez_id=102724539 | |entrez_id=102724539 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_125998 | |nearest_refseq=NR_125998 | ||
|nearest_unigene=Hs.516816 | |nearest_unigene=Hs.516816 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=8195023 | ||
| + | |start_of_center_position=8195026 | ||
| + | |strand=- | ||
| + | |tata_box=-57(AGCTATTTAGGG,-,0.00),81(GGTTCTAAAAAG,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_10100.1 | |tss_id=hg_10100.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 15:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8195026 |
|---|---|
| End of the center position in the TSS region: | 8195027 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -13646 |
|---|---|
| Nearest PromoterID: | NR_125998 |
| Entrez ID: | 102724539 |
| Nearest Unigene: | Hs.516816 |
| Nearest Refseq: | NR_125998 |
| Nearest Ensembl: | ENSG00000227634 |
| Gene Name: | LINC01714 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1714 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -57(AGCTATTTAGGG,-,0.00),81(GGTTCTAAAAAG,-,0.00) |
